Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP13_F_J17
(878 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_02_0119 - 8502455-8503015,8503311-8504009,8504512-8504571,850... 31 1.2
08_02_0461 - 17432493-17432878,17434327-17434611,17435911-17436406 31 1.2
01_02_0122 + 11348686-11348948,11350492-11350587,11351513-113515... 31 1.6
10_01_0323 + 3530246-3530446,3531091-3531726,3531860-3532018,353... 30 2.1
11_03_0146 + 10744403-10744603,10745199-10745834,10745967-107461... 29 3.7
02_05_0886 + 32507324-32507938,32508103-32508252,32508498-325089... 29 4.9
08_01_0824 - 8000829-8001272 29 6.5
06_03_0234 + 18555036-18555264,18559110-18559234,18559506-18559925 29 6.5
04_04_0766 - 27923120-27923554,27923843-27924580,27924815-279248... 29 6.5
>11_02_0119 -
8502455-8503015,8503311-8504009,8504512-8504571,
8504744-8504800
Length = 458
Score = 31.1 bits (67), Expect = 1.2
Identities = 18/62 (29%), Positives = 30/62 (48%), Gaps = 3/62 (4%)
Frame = +3
Query: 294 STTERSGRSSKSQRSLMTRSTRQARRRPE---KRNRCISLTTVSVAAQKTRLLSTACAWR 464
+T R +S+ + S R+ R+A + +R C+S V++ K LL C W+
Sbjct: 309 TTRRRCCKSTGKKVSAGARAKRKAPAPEDTDGERRHCVSNVNVTIMDNKELLLELQCQWK 368
Query: 465 EL 470
EL
Sbjct: 369 EL 370
>08_02_0461 - 17432493-17432878,17434327-17434611,17435911-17436406
Length = 388
Score = 31.1 bits (67), Expect = 1.2
Identities = 23/70 (32%), Positives = 31/70 (44%), Gaps = 2/70 (2%)
Frame = +3
Query: 234 RILFSSARXSCRRRWTVTARSTTERSGRSSKSQRSLM--TRSTRQARRRPEKRNRCISLT 407
RI S CR R T RST+ RSGR + Q + + TR +R E + +L
Sbjct: 86 RISAQSGAWLCRERTAETCRSTSSRSGRYRRLQPAAVAGTRRAELIKRLQELCHPANNLP 145
Query: 408 TVSVAAQKTR 437
S + Q R
Sbjct: 146 NCSASWQPQR 155
>01_02_0122 +
11348686-11348948,11350492-11350587,11351513-11351524,
11354009-11354699
Length = 353
Score = 30.7 bits (66), Expect = 1.6
Identities = 17/63 (26%), Positives = 28/63 (44%)
Frame = +3
Query: 261 SCRRRWTVTARSTTERSGRSSKSQRSLMTRSTRQARRRPEKRNRCISLTTVSVAAQKTRL 440
SCR RW R+ +R S + + ++ RR E +S T ++A +K +
Sbjct: 52 SCRLRWINYLRADLKRGNISPQEEDIILNLHATLGNRRMEMHTEMLSATGFNLAQRKFPM 111
Query: 441 LST 449
L T
Sbjct: 112 LLT 114
>10_01_0323 +
3530246-3530446,3531091-3531726,3531860-3532018,
3532276-3532569,3557747-3557941,3558875-3559095,
3559190-3559373,3559797-3559973,3561319-3561824,
3561880-3562060
Length = 917
Score = 30.3 bits (65), Expect = 2.1
Identities = 12/33 (36%), Positives = 22/33 (66%)
Frame = +3
Query: 513 GLMEKIAEVLKEAKEGSVNYYRTFQISIDRHKL 611
GL+E IAE ++AKE ++ R F++ +D+ +
Sbjct: 385 GLLESIAEYDRQAKESAMEIERQFRLVVDKQHM 417
>11_03_0146 +
10744403-10744603,10745199-10745834,10745967-10746125,
10746398-10747036,10748018-10748151,10748281-10748464,
10748882-10749217,10751659-10751945,10752863-10753253,
10753351-10753615,10753740-10753818,10754123-10754543
Length = 1243
Score = 29.5 bits (63), Expect = 3.7
Identities = 11/33 (33%), Positives = 22/33 (66%)
Frame = +3
Query: 513 GLMEKIAEVLKEAKEGSVNYYRTFQISIDRHKL 611
GL+E +AE ++AKE ++ R F++ +D+ +
Sbjct: 335 GLLESLAEYDRQAKESALEIERQFRLVVDKQHM 367
>02_05_0886 +
32507324-32507938,32508103-32508252,32508498-32508935,
32509038-32509151,32509256-32509852
Length = 637
Score = 29.1 bits (62), Expect = 4.9
Identities = 16/42 (38%), Positives = 21/42 (50%)
Frame = +3
Query: 261 SCRRRWTVTARSTTERSGRSSKSQRSLMTRSTRQARRRPEKR 386
SC +R T E SSK +R+ + S RRRPE+R
Sbjct: 45 SCTKRDKGTQDYQKEARSMSSKKKRAAIDLSLEAERRRPEER 86
>08_01_0824 - 8000829-8001272
Length = 147
Score = 28.7 bits (61), Expect = 6.5
Identities = 16/42 (38%), Positives = 22/42 (52%)
Frame = +3
Query: 270 RRWTVTARSTTERSGRSSKSQRSLMTRSTRQARRRPEKRNRC 395
RR R+ +G+ +S R +R TRQ RRR +R RC
Sbjct: 107 RRGGARGRAEVVVAGKRRRSWRRRRSR-TRQRRRRSRRRRRC 147
>06_03_0234 + 18555036-18555264,18559110-18559234,18559506-18559925
Length = 257
Score = 28.7 bits (61), Expect = 6.5
Identities = 13/32 (40%), Positives = 20/32 (62%)
Frame = +3
Query: 516 LMEKIAEVLKEAKEGSVNYYRTFQISIDRHKL 611
L E IAE ++AKE +V R F+I +D+ +
Sbjct: 172 LQESIAEYDRQAKESAVEIERHFRIVVDKQHM 203
>04_04_0766 -
27923120-27923554,27923843-27924580,27924815-27924874,
27925281-27925328
Length = 426
Score = 28.7 bits (61), Expect = 6.5
Identities = 11/30 (36%), Positives = 16/30 (53%)
Frame = +3
Query: 381 KRNRCISLTTVSVAAQKTRLLSTACAWREL 470
+R C+S V++ K LL C W+EL
Sbjct: 355 ERRHCVSNVNVTIMDNKEVLLELQCQWKEL 384
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,298,626
Number of Sequences: 37544
Number of extensions: 321656
Number of successful extensions: 837
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 818
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 837
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2479731924
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -