Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP13_F_J17
         (878 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    25   0.70 
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    25   0.92 
DQ855483-1|ABH88170.1|  117|Apis mellifera chemosensory protein ...    23   4.9  
AJ973398-1|CAJ01445.1|  117|Apis mellifera hypothetical protein ...    23   4.9  
AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.            22   8.6  

>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 25.4 bits (53), Expect = 0.70
 Identities = 12/27 (44%), Positives = 16/27 (59%), Gaps = 2/27 (7%)
 Frame = -3

Query: 462 STHK--PWIATVFSGQLPTPWLMKYND 388
           STHK  PW+  +F  +LP   LM+  D
Sbjct: 328 STHKMAPWVRKIFIRRLPKLLLMRVPD 354


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 25.0 bits (52), Expect = 0.92
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = -2

Query: 421 ATDTVVNEIQRFLFSGLLRACLVDLVIND 335
           A D  ++    F+F  L+  CLV++V+ D
Sbjct: 306 AVDAFMSVCTVFVFMALMEYCLVNIVLGD 334


>DQ855483-1|ABH88170.1|  117|Apis mellifera chemosensory protein 2
           protein.
          Length = 117

 Score = 22.6 bits (46), Expect = 4.9
 Identities = 15/37 (40%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
 Frame = +3

Query: 276 WTVTARSTTERSGRSSKSQRSL-MTRSTRQARRRPEK 383
           +TVTA +   +SGRS  S   L M  S ++  RR  K
Sbjct: 17  YTVTAETEEGQSGRSRVSDEQLNMALSDQRYLRRQLK 53


>AJ973398-1|CAJ01445.1|  117|Apis mellifera hypothetical protein
           protein.
          Length = 117

 Score = 22.6 bits (46), Expect = 4.9
 Identities = 15/37 (40%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
 Frame = +3

Query: 276 WTVTARSTTERSGRSSKSQRSL-MTRSTRQARRRPEK 383
           +TVTA +   +SGRS  S   L M  S ++  RR  K
Sbjct: 17  YTVTAETEEGQSGRSRVSDEQLNMALSDQRYLRRQLK 53


>AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.
          Length = 493

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 13/40 (32%), Positives = 18/40 (45%)
 Frame = +2

Query: 491 GTIIIVLWPNGKNCRSTERG*GRFSELLQDFSDLNRSSQI 610
           GT I   W NG N  +  RG   F     D  DL ++ ++
Sbjct: 399 GTKIDNWWDNGSNQIAFSRGCSGFVAFNGDQYDLKKNLKV 438


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 202,095
Number of Sequences: 438
Number of extensions: 3814
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28523595
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)