Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP13_F_J16
         (843 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC115382-1|AAI15383.1|  246|Homo sapiens XRCC6 binding protein 1...    31   5.2  
BC115381-1|AAI15382.1|  246|Homo sapiens XRCC6 binding protein 1...    31   5.2  
BC012776-1|AAH12776.3|  246|Homo sapiens XRCC6 binding protein 1...    31   5.2  
AF078164-1|AAD31085.1|  288|Homo sapiens Ku70-binding protein pr...    31   5.2  

>BC115382-1|AAI15383.1|  246|Homo sapiens XRCC6 binding protein 1
           protein.
          Length = 246

 Score = 31.1 bits (67), Expect = 5.2
 Identities = 11/27 (40%), Positives = 20/27 (74%)
 Frame = +3

Query: 291 KCEQNVFKCVQTSPIVKIMMAALKSSG 371
           KC+  + K ++T+P VK+++ A+K SG
Sbjct: 51  KCQLRLLKTLETNPYVKLLLDAMKHSG 77


>BC115381-1|AAI15382.1|  246|Homo sapiens XRCC6 binding protein 1
           protein.
          Length = 246

 Score = 31.1 bits (67), Expect = 5.2
 Identities = 11/27 (40%), Positives = 20/27 (74%)
 Frame = +3

Query: 291 KCEQNVFKCVQTSPIVKIMMAALKSSG 371
           KC+  + K ++T+P VK+++ A+K SG
Sbjct: 51  KCQLRLLKTLETNPYVKLLLDAMKHSG 77


>BC012776-1|AAH12776.3|  246|Homo sapiens XRCC6 binding protein 1
           protein.
          Length = 246

 Score = 31.1 bits (67), Expect = 5.2
 Identities = 11/27 (40%), Positives = 20/27 (74%)
 Frame = +3

Query: 291 KCEQNVFKCVQTSPIVKIMMAALKSSG 371
           KC+  + K ++T+P VK+++ A+K SG
Sbjct: 51  KCQLRLLKTLETNPYVKLLLDAMKHSG 77


>AF078164-1|AAD31085.1|  288|Homo sapiens Ku70-binding protein
           protein.
          Length = 288

 Score = 31.1 bits (67), Expect = 5.2
 Identities = 11/27 (40%), Positives = 20/27 (74%)
 Frame = +3

Query: 291 KCEQNVFKCVQTSPIVKIMMAALKSSG 371
           KC+  + K ++T+P VK+++ A+K SG
Sbjct: 93  KCQLRLLKTLETNPYVKLLLDAMKHSG 119


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 96,450,353
Number of Sequences: 237096
Number of extensions: 1785529
Number of successful extensions: 6344
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6286
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6344
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 10649685938
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)