Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP13_F_J16
         (843 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex det...    23   2.7  
DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    23   3.5  
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    23   3.5  
AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.                23   4.7  
DQ325105-1|ABD14119.1|  180|Apis mellifera complementary sex det...    22   6.2  
AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex det...    22   6.2  

>DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 23.4 bits (48), Expect = 2.7
 Identities = 9/24 (37%), Positives = 12/24 (50%)
 Frame = -3

Query: 658 SNFGIHKETNFPYNLYSMYTFTLN 587
           SN  IH   N+ YN  + Y +  N
Sbjct: 86  SNKTIHNNNNYKYNYNNKYNYNNN 109


>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
           isoform B protein.
          Length = 931

 Score = 23.0 bits (47), Expect = 3.5
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = -1

Query: 123 QYCHQTFLINIDVKLNRVVLKVIGNKTK 40
           +Y H   L++ DVKL  V+L  I N+ K
Sbjct: 711 RYLHSQGLVHRDVKLKNVLLD-IENRAK 737



 Score = 21.8 bits (44), Expect = 8.1
 Identities = 9/16 (56%), Positives = 10/16 (62%)
 Frame = -1

Query: 117 CHQTFLINIDVKLNRV 70
           C QT+LIN    LN V
Sbjct: 289 CLQTYLINASTYLNEV 304


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
           isoform A protein.
          Length = 969

 Score = 23.0 bits (47), Expect = 3.5
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = -1

Query: 123 QYCHQTFLINIDVKLNRVVLKVIGNKTK 40
           +Y H   L++ DVKL  V+L  I N+ K
Sbjct: 749 RYLHSQGLVHRDVKLKNVLLD-IENRAK 775



 Score = 21.8 bits (44), Expect = 8.1
 Identities = 9/16 (56%), Positives = 10/16 (62%)
 Frame = -1

Query: 117 CHQTFLINIDVKLNRV 70
           C QT+LIN    LN V
Sbjct: 327 CLQTYLINASTYLNEV 342


>AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.
          Length = 316

 Score = 22.6 bits (46), Expect = 4.7
 Identities = 7/24 (29%), Positives = 14/24 (58%)
 Frame = -1

Query: 123 QYCHQTFLINIDVKLNRVVLKVIG 52
           Q+CH   +++ DVK   +++   G
Sbjct: 169 QFCHNAGIVHADVKPKNILMSKNG 192


>DQ325105-1|ABD14119.1|  180|Apis mellifera complementary sex
           determiner protein.
          Length = 180

 Score = 22.2 bits (45), Expect = 6.2
 Identities = 8/25 (32%), Positives = 14/25 (56%)
 Frame = +1

Query: 616 NYRENLSLYGSRNLKSSVIFSNLKY 690
           NY  N+S Y + N  +  ++ N+ Y
Sbjct: 88  NYISNISNYNNNNNYNKKLYYNINY 112


>AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex
           determiner protein.
          Length = 418

 Score = 22.2 bits (45), Expect = 6.2
 Identities = 8/25 (32%), Positives = 14/25 (56%)
 Frame = +1

Query: 616 NYRENLSLYGSRNLKSSVIFSNLKY 690
           NY  N+S Y + N  +  ++ N+ Y
Sbjct: 326 NYISNISNYNNNNNYNKKLYYNINY 350


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 210,600
Number of Sequences: 438
Number of extensions: 4730
Number of successful extensions: 11
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27067071
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)