Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP13_F_J15
         (871 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB1A10.15 |||Arv1-like family protein|Schizosaccharomyces pom...    28   2.0  
SPBC3E7.05c |||conserved eukaryotic protein|Schizosaccharomyces ...    28   2.0  
SPBC1706.03 |fzo1|SPBC839.01|mitochondrial fusion GTPase protein...    27   3.5  
SPAC13G6.06c |||glycine cleavage complex subunit P|Schizosacchar...    26   8.0  

>SPAPB1A10.15 |||Arv1-like family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 220

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 15/40 (37%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
 Frame = -1

Query: 145 LVNVLASEPTQRTTK-AKIINFCISIVSFELQVTESNLKE 29
           L N L++   +  TK AK++NFCI I  F + +  S L++
Sbjct: 63  LFNSLSARTFRNLTKCAKVVNFCILISLFNVFLVWSRLEK 102


>SPBC3E7.05c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 550

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 15/47 (31%), Positives = 24/47 (51%)
 Frame = -1

Query: 583 LSGTFKKXRTKQQFCFEEIESKVYXEVHSGI*QLLISGKEPWQWFFQ 443
           L G   K + +Q+  FE+   +   E+ S +  LLI+  E WQ  F+
Sbjct: 235 LHGKLSKIQQEQEHLFEQRLREKVSEMESKLEALLIARDEKWQSAFE 281


>SPBC1706.03 |fzo1|SPBC839.01|mitochondrial fusion GTPase
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 758

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = -1

Query: 607 HNTXKLXRLSGTFKKXRTKQQFCFEEIESKVYXEVHS 497
           H   +L  LS  F+K + +QQF +++ ES V   V S
Sbjct: 434 HLQQRLTDLSPKFRKVKHEQQFTYQKNESLVEATVQS 470


>SPAC13G6.06c |||glycine cleavage complex subunit
            P|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1017

 Score = 25.8 bits (54), Expect = 8.0
 Identities = 22/120 (18%), Positives = 48/120 (40%), Gaps = 1/120 (0%)
 Frame = -1

Query: 400  AHFAALVMSSVRRSEHLTLQSLPGLAPLLHQYRSLIWNNP*SFEPLRFVFVLDVSRL-LS 224
            A+   + ++ +R +    L +   +A  L  +  L++ N  +       F+LD      +
Sbjct: 828  AYMRMMGLAGLRDASKAALLNANYMAKRLSSHYKLVYTNKNNL--CAHEFILDAREFKAT 885

Query: 223  CSTRHTQFLMRFSSKPCFLSSCTRPHLVNVLASEPTQRTTKAKIINFCISIVSFELQVTE 44
                 T    R         + + P + N L  EPT+  +  ++  FC +++S   ++ E
Sbjct: 886  AGVDATDIAKRLQDYSFHAPTLSWP-IANTLMIEPTESESMYEMDRFCDALISIRQEIRE 944


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,297,658
Number of Sequences: 5004
Number of extensions: 41199
Number of successful extensions: 122
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 121
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 122
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 434475230
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)