Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP13_F_J14
(1328 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 32 0.15
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 31 0.27
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 30 0.63
SPBC83.01 |ucp8||UBA/EH/EF hand domain protein Ucp8|Schizosaccha... 30 0.83
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 28 2.5
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 28 2.5
SPAC2F3.14c |||conserved fungal protein|Schizosaccharomyces pomb... 28 3.3
SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr 1... 28 3.3
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 27 4.4
SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr... 27 7.7
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 32.3 bits (70), Expect = 0.15
Identities = 13/34 (38%), Positives = 14/34 (41%)
Frame = +2
Query: 662 PXPPPXPXIPXXPPPXPPXPXTXPXPXAPXXHXP 763
P PPP P + PPP PP P P P
Sbjct: 750 PVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPP 783
Score = 28.7 bits (61), Expect = 1.9
Identities = 12/35 (34%), Positives = 13/35 (37%)
Frame = +2
Query: 662 PXPPPXPXIPXXPPPXPPXPXTXPXPXAPXXHXPP 766
P PPP +P P P P P P PP
Sbjct: 733 PPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPP 767
Score = 27.1 bits (57), Expect = 5.8
Identities = 13/34 (38%), Positives = 13/34 (38%), Gaps = 1/34 (2%)
Frame = +2
Query: 668 PPPXPXIPXXPPPXP-PXPXTXPXPXAPXXHXPP 766
PPP P P P P P P P P PP
Sbjct: 732 PPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPP 765
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 31.5 bits (68), Expect = 0.27
Identities = 15/37 (40%), Positives = 17/37 (45%), Gaps = 3/37 (8%)
Frame = +2
Query: 662 PXPPPXPX-IPXXP--PPXPPXPXTXPXPXAPXXHXP 763
P PPP P +P P PP P P + P P P P
Sbjct: 1705 PTPPPPPMSVPPPPSAPPMPAGPPSAPPPPLPASSAP 1741
Score = 30.3 bits (65), Expect = 0.63
Identities = 14/35 (40%), Positives = 14/35 (40%), Gaps = 3/35 (8%)
Frame = +2
Query: 671 PPXPXIPXXPPPX---PPXPXTXPXPXAPXXHXPP 766
PP P PPP PP P P P P PP
Sbjct: 1699 PPQMSAPTPPPPPMSVPPPPSAPPMPAGPPSAPPP 1733
Score = 30.3 bits (65), Expect = 0.63
Identities = 14/34 (41%), Positives = 15/34 (44%)
Frame = +2
Query: 662 PXPPPXPXIPXXPPPXPPXPXTXPXPXAPXXHXP 763
P PP P +P PP PP P P AP P
Sbjct: 1715 PPPPSAPPMPAGPPSAPPPP--LPASSAPSVPNP 1746
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 30.3 bits (65), Expect = 0.63
Identities = 16/42 (38%), Positives = 16/42 (38%), Gaps = 1/42 (2%)
Frame = +2
Query: 626 APXLXXDXXQXXPXPPPXPXIPXXPPPXP-PXPXTXPXPXAP 748
AP L P P P P PP P P P P P AP
Sbjct: 446 APPLPPSAPIAPPLPAGMPAAPPLPPAAPAPPPAPAPAPAAP 487
Score = 27.5 bits (58), Expect = 4.4
Identities = 14/40 (35%), Positives = 14/40 (35%), Gaps = 3/40 (7%)
Frame = +2
Query: 629 PXLXXDXXQXXPXPPPXPXIPXXP---PPXPPXPXTXPXP 739
P L P PP P P P P PP P P P
Sbjct: 437 PSLPMGAPAAPPLPPSAPIAPPLPAGMPAAPPLPPAAPAP 476
>SPBC83.01 |ucp8||UBA/EH/EF hand domain protein
Ucp8|Schizosaccharomyces pombe|chr 2|||Manual
Length = 884
Score = 29.9 bits (64), Expect = 0.83
Identities = 14/45 (31%), Positives = 17/45 (37%), Gaps = 1/45 (2%)
Frame = +2
Query: 626 APXLXXDXXQXXPXPPPXPXIPXXPPPXPPXPXTXP-XPXAPXXH 757
+P + P P P P + PPP P P P AP H
Sbjct: 720 SPAIKPQVTPAPPTPAPTPAVKHHPPPPPVRSSISPSMPPAPLTH 764
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 28.3 bits (60), Expect = 2.5
Identities = 12/28 (42%), Positives = 13/28 (46%), Gaps = 1/28 (3%)
Frame = +2
Query: 668 PPPXPX-IPXXPPPXPPXPXTXPXPXAP 748
PPP P P P PP P + P P P
Sbjct: 150 PPPSPASAPPIPSKAPPIPSSLPPPAQP 177
Score = 27.9 bits (59), Expect = 3.3
Identities = 11/27 (40%), Positives = 12/27 (44%)
Frame = +2
Query: 668 PPPXPXIPXXPPPXPPXPXTXPXPXAP 748
PP P +P PP PP P AP
Sbjct: 184 PPSAPSLPSAVPPMPPKVPPPPLSQAP 210
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 28.3 bits (60), Expect = 2.5
Identities = 13/43 (30%), Positives = 14/43 (32%)
Frame = +2
Query: 662 PXPPPXPXIPXXPPPXPPXPXTXPXPXAPXXHXPPXXXQXXPA 790
P P P +P PPP P P P P PA
Sbjct: 1199 PVPKPSVGVPPVPPPSTAPPVPTPSAGLPPVPVPTAKAPPVPA 1241
Score = 27.9 bits (59), Expect = 3.3
Identities = 13/46 (28%), Positives = 15/46 (32%)
Frame = +2
Query: 626 APXLXXDXXQXXPXPPPXPXIPXXPPPXPPXPXTXPXPXAPXXHXP 763
AP + P P P +P PPP P P P P
Sbjct: 1168 APPVPAPSSGIPPVPKPAAGVPPVPPPSEAPPVPKPSVGVPPVPPP 1213
Score = 27.5 bits (58), Expect = 4.4
Identities = 14/46 (30%), Positives = 15/46 (32%)
Frame = +2
Query: 626 APXLXXDXXQXXPXPPPXPXIPXXPPPXPPXPXTXPXPXAPXXHXP 763
AP + P P P IP P P P P AP P
Sbjct: 1158 APPVPKPSVAAPPVPAPSSGIPPVPKPAAGVPPVPPPSEAPPVPKP 1203
>SPAC2F3.14c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 331
Score = 27.9 bits (59), Expect = 3.3
Identities = 14/44 (31%), Positives = 16/44 (36%), Gaps = 2/44 (4%)
Frame = +2
Query: 662 PXPPPXPX--IPXXPPPXPPXPXTXPXPXAPXXHXPPXXXQXXP 787
P PP P +P P P P P P P PP + P
Sbjct: 104 PREPPLPNEPVPEEPLPGEPPLPDEPVPEEPLPGEPPLPNEPVP 147
>SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 857
Score = 27.9 bits (59), Expect = 3.3
Identities = 13/35 (37%), Positives = 14/35 (40%)
Frame = +2
Query: 662 PXPPPXPXIPXXPPPXPPXPXTXPXPXAPXXHXPP 766
P PP P +P P P P P AP PP
Sbjct: 635 PQPPAAPVVPEVPS-VPQRPAVPVVPEAPSVPQPP 668
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 27.5 bits (58), Expect = 4.4
Identities = 11/21 (52%), Positives = 11/21 (52%), Gaps = 1/21 (4%)
Frame = +2
Query: 662 PXPPPXPXI-PXXPPPXPPXP 721
P PPP P P PP PP P
Sbjct: 10 PPPPPPPGFEPPSQPPPPPPP 30
Score = 26.6 bits (56), Expect = 7.7
Identities = 10/22 (45%), Positives = 10/22 (45%)
Frame = +2
Query: 668 PPPXPXIPXXPPPXPPXPXTXP 733
PPP P P PP P P P
Sbjct: 9 PPPPPPPPGFEPPSQPPPPPPP 30
>SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 305
Score = 26.6 bits (56), Expect = 7.7
Identities = 18/47 (38%), Positives = 18/47 (38%)
Frame = -3
Query: 765 GGXXXXGAXGXGXVXGXGGXGGGXXGIXGXGGGXGXXWXXSXXXXGA 625
GG G G G G GG GG G G GG G S GA
Sbjct: 23 GGRGGFGG-GRGGARG-GGRGGARGGRGGRGGARGGRGGSSGGRGGA 67
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,484,619
Number of Sequences: 5004
Number of extensions: 14099
Number of successful extensions: 203
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 36
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 147
length of database: 2,362,478
effective HSP length: 75
effective length of database: 1,987,178
effective search space used: 729294326
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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