Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP13_F_J13
(815 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC22A12.16 |||ATP-citrate synthase subunit 2 |Schizosaccharomy... 107 1e-24
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 32 0.085
SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large subunit|... 29 0.79
SPAC16E8.09 |scd1|ral1|RhoGEF Scd1|Schizosaccharomyces pombe|chr... 28 1.8
SPAC17G6.05c |||Rhophilin-2 homolog|Schizosaccharomyces pombe|ch... 27 4.2
SPCC126.09 |||vacuolar membrane zinc transporter |Schizosaccharo... 26 7.4
>SPAC22A12.16 |||ATP-citrate synthase subunit 2 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 492
Score = 107 bits (258), Expect = 1e-24
Identities = 58/130 (44%), Positives = 76/130 (58%), Gaps = 4/130 (3%)
Frame = +2
Query: 323 TALVPCRFATFEQSTVWEDELGK----NPWLSKEQLVVKPDQLIKRRGKLGLVGVNKTAA 490
T ++P T+ + V ED K +PW+ + +LV KPDQLIKRRGK GL+ +N T
Sbjct: 50 TLVIPAESTTYRE--VVEDVFAKVEQEHPWVKETKLVAKPDQLIKRRGKSGLLKLNATWD 107
Query: 491 EVRRWLGEHMAKEQTIGACVGRLRHFIVEPFVXHEPSDEMYLCIXSGRRSDTILFHHQGG 670
E + W+ E K Q + VG L F+VEPFV H P+ E Y+ I S R D ILF ++GG
Sbjct: 108 EAKEWIRERAGKNQKVQHAVGYLTTFLVEPFVPHPPNTEYYININSVREGDWILFCNEGG 167
Query: 671 VXVXXVDXLA 700
V V VD A
Sbjct: 168 VDVGDVDAKA 177
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 32.3 bits (70), Expect = 0.085
Identities = 20/53 (37%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
Frame = -1
Query: 521 PCARRANAGP-PPQSCSRRPDPVCRDA*LAGPASRPIAPSRAMDFFPAHPPTL 366
P + A + P PPQ S P P R A G P++ SRA+ PA PP +
Sbjct: 343 PRSNAAGSIPLPPQGRSAPPPPPPRSAPSTGRQPPPLSSSRAVSNPPAPPPAI 395
>SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1752
Score = 29.1 bits (62), Expect = 0.79
Identities = 20/64 (31%), Positives = 33/64 (51%)
Frame = -3
Query: 558 SRPTQAPIVCSLAMCSPSQRRTSAAVLFTPTRPSLPRRLISWSGFTTNCSFESHGFFPSS 379
S P+ +P S + SPS TS + ++PT PS S+S + + S S + P+S
Sbjct: 1574 SSPSYSPTSPSYSPTSPSYSPTSPS--YSPTSPSYSATSPSYSPTSPSYSPTSPSYSPTS 1631
Query: 378 SSHT 367
S++
Sbjct: 1632 PSYS 1635
Score = 27.9 bits (59), Expect = 1.8
Identities = 19/62 (30%), Positives = 32/62 (51%)
Frame = -3
Query: 552 PTQAPIVCSLAMCSPSQRRTSAAVLFTPTRPSLPRRLISWSGFTTNCSFESHGFFPSSSS 373
P+ +P S + SPS TS + ++PT PS S+S + + S S + P+S S
Sbjct: 1590 PSYSPTSPSYSPTSPSYSATSPS--YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPS 1647
Query: 372 HT 367
++
Sbjct: 1648 YS 1649
Score = 27.9 bits (59), Expect = 1.8
Identities = 19/62 (30%), Positives = 32/62 (51%)
Frame = -3
Query: 552 PTQAPIVCSLAMCSPSQRRTSAAVLFTPTRPSLPRRLISWSGFTTNCSFESHGFFPSSSS 373
P+ +P S + SPS TS + ++PT PS S+S + + S S + P+S S
Sbjct: 1597 PSYSPTSPSYSATSPSYSPTSPS--YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPS 1654
Query: 372 HT 367
++
Sbjct: 1655 YS 1656
Score = 27.5 bits (58), Expect = 2.4
Identities = 19/62 (30%), Positives = 32/62 (51%)
Frame = -3
Query: 552 PTQAPIVCSLAMCSPSQRRTSAAVLFTPTRPSLPRRLISWSGFTTNCSFESHGFFPSSSS 373
P+ +P S + SPS TS + ++PT PS S+S + + S S + P+S S
Sbjct: 1611 PSYSPTSPSYSPTSPSYSPTSPS--YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPS 1668
Query: 372 HT 367
++
Sbjct: 1669 YS 1670
Score = 27.5 bits (58), Expect = 2.4
Identities = 19/62 (30%), Positives = 32/62 (51%)
Frame = -3
Query: 552 PTQAPIVCSLAMCSPSQRRTSAAVLFTPTRPSLPRRLISWSGFTTNCSFESHGFFPSSSS 373
P+ +P S + SPS TS + ++PT PS S+S + + S S + P+S S
Sbjct: 1618 PSYSPTSPSYSPTSPSYSPTSPS--YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPS 1675
Query: 372 HT 367
++
Sbjct: 1676 YS 1677
Score = 27.5 bits (58), Expect = 2.4
Identities = 19/62 (30%), Positives = 32/62 (51%)
Frame = -3
Query: 552 PTQAPIVCSLAMCSPSQRRTSAAVLFTPTRPSLPRRLISWSGFTTNCSFESHGFFPSSSS 373
P+ +P S + SPS TS + ++PT PS S+S + + S S + P+S S
Sbjct: 1625 PSYSPTSPSYSPTSPSYSPTSPS--YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPS 1682
Query: 372 HT 367
++
Sbjct: 1683 YS 1684
Score = 27.5 bits (58), Expect = 2.4
Identities = 19/62 (30%), Positives = 32/62 (51%)
Frame = -3
Query: 552 PTQAPIVCSLAMCSPSQRRTSAAVLFTPTRPSLPRRLISWSGFTTNCSFESHGFFPSSSS 373
P+ +P S + SPS TS + ++PT PS S+S + + S S + P+S S
Sbjct: 1632 PSYSPTSPSYSPTSPSYSPTSPS--YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPS 1689
Query: 372 HT 367
++
Sbjct: 1690 YS 1691
Score = 27.5 bits (58), Expect = 2.4
Identities = 19/62 (30%), Positives = 32/62 (51%)
Frame = -3
Query: 552 PTQAPIVCSLAMCSPSQRRTSAAVLFTPTRPSLPRRLISWSGFTTNCSFESHGFFPSSSS 373
P+ +P S + SPS TS + ++PT PS S+S + + S S + P+S S
Sbjct: 1639 PSYSPTSPSYSPTSPSYSPTSPS--YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPS 1696
Query: 372 HT 367
++
Sbjct: 1697 YS 1698
Score = 27.5 bits (58), Expect = 2.4
Identities = 19/62 (30%), Positives = 32/62 (51%)
Frame = -3
Query: 552 PTQAPIVCSLAMCSPSQRRTSAAVLFTPTRPSLPRRLISWSGFTTNCSFESHGFFPSSSS 373
P+ +P S + SPS TS + ++PT PS S+S + + S S + P+S S
Sbjct: 1646 PSYSPTSPSYSPTSPSYSPTSPS--YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPS 1703
Query: 372 HT 367
++
Sbjct: 1704 YS 1705
Score = 27.5 bits (58), Expect = 2.4
Identities = 19/62 (30%), Positives = 32/62 (51%)
Frame = -3
Query: 552 PTQAPIVCSLAMCSPSQRRTSAAVLFTPTRPSLPRRLISWSGFTTNCSFESHGFFPSSSS 373
P+ +P S + SPS TS + ++PT PS S+S + + S S + P+S S
Sbjct: 1653 PSYSPTSPSYSPTSPSYSPTSPS--YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPS 1710
Query: 372 HT 367
++
Sbjct: 1711 YS 1712
Score = 27.5 bits (58), Expect = 2.4
Identities = 19/62 (30%), Positives = 32/62 (51%)
Frame = -3
Query: 552 PTQAPIVCSLAMCSPSQRRTSAAVLFTPTRPSLPRRLISWSGFTTNCSFESHGFFPSSSS 373
P+ +P S + SPS TS + ++PT PS S+S + + S S + P+S S
Sbjct: 1660 PSYSPTSPSYSPTSPSYSPTSPS--YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPS 1717
Query: 372 HT 367
++
Sbjct: 1718 YS 1719
Score = 27.5 bits (58), Expect = 2.4
Identities = 19/62 (30%), Positives = 32/62 (51%)
Frame = -3
Query: 552 PTQAPIVCSLAMCSPSQRRTSAAVLFTPTRPSLPRRLISWSGFTTNCSFESHGFFPSSSS 373
P+ +P S + SPS TS + ++PT PS S+S + + S S + P+S S
Sbjct: 1667 PSYSPTSPSYSPTSPSYSPTSPS--YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPS 1724
Query: 372 HT 367
++
Sbjct: 1725 YS 1726
Score = 27.5 bits (58), Expect = 2.4
Identities = 19/62 (30%), Positives = 32/62 (51%)
Frame = -3
Query: 552 PTQAPIVCSLAMCSPSQRRTSAAVLFTPTRPSLPRRLISWSGFTTNCSFESHGFFPSSSS 373
P+ +P S + SPS TS + ++PT PS S+S + + S S + P+S S
Sbjct: 1674 PSYSPTSPSYSPTSPSYSPTSPS--YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPS 1731
Query: 372 HT 367
++
Sbjct: 1732 YS 1733
Score = 27.5 bits (58), Expect = 2.4
Identities = 19/62 (30%), Positives = 32/62 (51%)
Frame = -3
Query: 552 PTQAPIVCSLAMCSPSQRRTSAAVLFTPTRPSLPRRLISWSGFTTNCSFESHGFFPSSSS 373
P+ +P S + SPS TS + ++PT PS S+S + + S S + P+S S
Sbjct: 1681 PSYSPTSPSYSPTSPSYSPTSPS--YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPS 1738
Query: 372 HT 367
++
Sbjct: 1739 YS 1740
Score = 27.5 bits (58), Expect = 2.4
Identities = 19/62 (30%), Positives = 32/62 (51%)
Frame = -3
Query: 552 PTQAPIVCSLAMCSPSQRRTSAAVLFTPTRPSLPRRLISWSGFTTNCSFESHGFFPSSSS 373
P+ +P S + SPS TS + ++PT PS S+S + + S S + P+S S
Sbjct: 1688 PSYSPTSPSYSPTSPSYSPTSPS--YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPS 1745
Query: 372 HT 367
++
Sbjct: 1746 YS 1747
Score = 26.6 bits (56), Expect = 4.2
Identities = 19/62 (30%), Positives = 30/62 (48%)
Frame = -3
Query: 552 PTQAPIVCSLAMCSPSQRRTSAAVLFTPTRPSLPRRLISWSGFTTNCSFESHGFFPSSSS 373
P P S + SPS TS + ++PT PS S+S + + S S + P+S S
Sbjct: 1569 PAYMPSSPSYSPTSPSYSPTSPS--YSPTSPSYSPTSPSYSATSPSYSPTSPSYSPTSPS 1626
Query: 372 HT 367
++
Sbjct: 1627 YS 1628
>SPAC16E8.09 |scd1|ral1|RhoGEF Scd1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 872
Score = 27.9 bits (59), Expect = 1.8
Identities = 17/55 (30%), Positives = 26/55 (47%)
Frame = -2
Query: 403 EPWIFSQLILPHCALFECGEPARYQSRTGGYVSVDQILSRCLVDSFRRHLLFLKE 239
E W+F +L P CALF C P + + VS++ + C +R L+ E
Sbjct: 109 EIWLFCRLGYPLCALFNC-LPVKQKLEVNSSVSLEN-TNVCKASLYRFMLMCKNE 161
>SPAC17G6.05c |||Rhophilin-2 homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 775
Score = 26.6 bits (56), Expect = 4.2
Identities = 11/16 (68%), Positives = 13/16 (81%)
Frame = -3
Query: 384 SSSSHTVLCSNVANLH 337
SSSSHT + SN+ NLH
Sbjct: 759 SSSSHTSISSNMRNLH 774
>SPCC126.09 |||vacuolar membrane zinc transporter
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 418
Score = 25.8 bits (54), Expect = 7.4
Identities = 11/47 (23%), Positives = 22/47 (46%), Gaps = 2/47 (4%)
Frame = -3
Query: 420 TNCSFESHGFFPSSSSHTVLCSNVANLHG--TRAVPEAMCLLIRSFP 286
+NC E H F S +H+ ++ ++H T + A+ + + P
Sbjct: 233 SNCDCECHAHFSSFPTHSGTPDDIEHIHSVYTMGIQTALLICLHKVP 279
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,096,234
Number of Sequences: 5004
Number of extensions: 62990
Number of successful extensions: 172
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 150
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 172
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 398435810
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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