Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP13_F_J13
         (815 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex det...    23   2.6  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    23   3.4  
AB208108-1|BAE72140.1|   92|Apis mellifera Broad complex zinc fi...    23   4.5  
DQ325105-1|ABD14119.1|  180|Apis mellifera complementary sex det...    22   5.9  
DQ325104-1|ABD14118.1|  180|Apis mellifera complementary sex det...    22   5.9  
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    22   7.8  
AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine beta-sy...    22   7.8  

>AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex
           determiner protein.
          Length = 426

 Score = 23.4 bits (48), Expect = 2.6
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = +3

Query: 237 NSFKNKRCRRKLSTRQRER 293
           NS+KN+R  RK   R +ER
Sbjct: 281 NSYKNEREYRKYRERSKER 299


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 23.0 bits (47), Expect = 3.4
 Identities = 11/35 (31%), Positives = 14/35 (40%)
 Frame = -3

Query: 408 FESHGFFPSSSSHTVLCSNVANLHGTRAVPEAMCL 304
           F   GF  S  +H +L SNV         P  + L
Sbjct: 786 FHESGFMESLDNHWILRSNVQQCEQLEKAPNTLGL 820


>AB208108-1|BAE72140.1|   92|Apis mellifera Broad complex zinc
           finger domain-Z3 isoform protein.
          Length = 92

 Score = 22.6 bits (46), Expect = 4.5
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = +2

Query: 590 HEPSDEMYLCIXSGRRSDT 646
           HE SD +Y+C    RR  T
Sbjct: 29  HEQSDTLYVCEFCNRRYRT 47


>DQ325105-1|ABD14119.1|  180|Apis mellifera complementary sex
           determiner protein.
          Length = 180

 Score = 22.2 bits (45), Expect = 5.9
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = +3

Query: 237 NSFKNKRCRRKLSTRQRER 293
           NS+KN++  RK   R +ER
Sbjct: 48  NSYKNEKEYRKYRERSKER 66


>DQ325104-1|ABD14118.1|  180|Apis mellifera complementary sex
           determiner protein.
          Length = 180

 Score = 22.2 bits (45), Expect = 5.9
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = +3

Query: 237 NSFKNKRCRRKLSTRQRER 293
           NS+KN++  RK   R +ER
Sbjct: 48  NSYKNEKEYRKYRERSKER 66


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 21.8 bits (44), Expect = 7.8
 Identities = 12/42 (28%), Positives = 19/42 (45%)
 Frame = +2

Query: 491 EVRRWLGEHMAKEQTIGACVGRLRHFIVEPFVXHEPSDEMYL 616
           + + W G +M +        GRLR++     V  + SD  YL
Sbjct: 258 QTKGWDGSNMVEGNESDHNDGRLRYWRTPSVVVSDYSDYSYL 299


>AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine
           beta-synthase protein.
          Length = 504

 Score = 21.8 bits (44), Expect = 7.8
 Identities = 5/8 (62%), Positives = 6/8 (75%)
 Frame = -3

Query: 663 WWWNRMVS 640
           WWWN  +S
Sbjct: 366 WWWNMKIS 373


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 219,807
Number of Sequences: 438
Number of extensions: 5464
Number of successful extensions: 34
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 34
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25974678
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)