Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP13_F_J12
         (918 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    28   2.1  
SPAPB1A10.06c |||ATP-dependent RNA helicase Dhr1 |Schizosaccharo...    27   2.8  
SPBC1604.14c |shk1|pak1, orb2|PAK-related kinase Shk1|Schizosacc...    27   3.7  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    26   6.5  
SPCC24B10.08c |||histone acetyltransferase complex subunit Ada2 ...    26   6.5  
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    26   8.6  
SPBC660.10 |||translation elongation factor G|Schizosaccharomyce...    26   8.6  

>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 15/53 (28%), Positives = 15/53 (28%)
 Frame = +3

Query: 759 PXTGIXXTPPGGXXGXXXXXGXPPPLXPXPXXNPRXPPXXSXPAPQGLPXXPP 917
           P       PP G          P P    P   P  PP      P G P  PP
Sbjct: 396 PGRSAPALPPLGNASRTSTPPVPTPPSLPPSAPPSLPPSAPPSLPMGAPAAPP 448



 Score = 25.8 bits (54), Expect = 8.6
 Identities = 11/31 (35%), Positives = 13/31 (41%)
 Frame = +3

Query: 825 PPPLXPXPXXNPRXPPXXSXPAPQGLPXXPP 917
           PPP  P    N   PP  +  +   LP  PP
Sbjct: 311 PPPPPPPSRRNRGKPPIGNGSSNSSLPPPPP 341


>SPAPB1A10.06c |||ATP-dependent RNA helicase Dhr1 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1183

 Score = 27.5 bits (58), Expect = 2.8
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = -2

Query: 215  EAPWLRCLSSLCKLNQLASKRSFC*CSYL 129
            +AP L  LS++C  +  + KR FC  +YL
Sbjct: 967  DAPALSLLSAVCAYDYASDKRKFCKENYL 995


>SPBC1604.14c |shk1|pak1, orb2|PAK-related kinase
           Shk1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 658

 Score = 27.1 bits (57), Expect = 3.7
 Identities = 15/47 (31%), Positives = 26/47 (55%)
 Frame = +1

Query: 193 KHRSQGASQGH*SKNFEQRR*NVTNLTSESHLGPTDDLHTSRKLFQS 333
           K+  +GA      ++ E+   +V+ L+S SHL PT    +S +L+ S
Sbjct: 208 KYLEEGAKPPFPRESTEKPLLSVSALSSSSHLQPTSATSSSSRLYPS 254


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 26.2 bits (55), Expect = 6.5
 Identities = 13/36 (36%), Positives = 16/36 (44%), Gaps = 3/36 (8%)
 Frame = +3

Query: 819  GXPPPLXPXPXXNPRXPPXXSXPAPQ---GLPXXPP 917
            G PP   P     P  PP  + P P+   G+P  PP
Sbjct: 1177 GIPPVPKPAAGVPPVPPPSEAPPVPKPSVGVPPVPP 1212


>SPCC24B10.08c |||histone acetyltransferase complex subunit Ada2
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 437

 Score = 26.2 bits (55), Expect = 6.5
 Identities = 14/36 (38%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
 Frame = +2

Query: 74  LLSGCGIQENFNLFL-RIKVNKNINKMSAWRQAGLT 178
           LL+G   Q+  N +  +I + K I+ +  WRQ GLT
Sbjct: 261 LLTGPDYQKFVNSYHEQITLKKQISDLQEWRQMGLT 296


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 25.8 bits (54), Expect = 8.6
 Identities = 18/62 (29%), Positives = 22/62 (35%)
 Frame = +3

Query: 732  RVXGGVXPXPXTGIXXTPPGGXXGXXXXXGXPPPLXPXPXXNPRXPPXXSXPAPQGLPXX 911
            ++ GG+ P        TPP             P   P P   P  PP  + P P G P  
Sbjct: 1676 KLFGGMAPAHPVS---TPPVRPQSAAPPQMSAPTPPPPPMSVP--PPPSAPPMPAGPPSA 1730

Query: 912  PP 917
            PP
Sbjct: 1731 PP 1732


>SPBC660.10 |||translation elongation factor G|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 813

 Score = 25.8 bits (54), Expect = 8.6
 Identities = 18/59 (30%), Positives = 27/59 (45%)
 Frame = -2

Query: 407 VIYCTILHKLIVDDFHACWLTIPSSLWNSFLEVCRSSVGPRCDSDVRFVTFQRLCSKFL 231
           +++ T  +KL  D  H   L IP S    F+E   + V   CD D      + LC ++L
Sbjct: 207 ILWDTSDNKLGTDGTHVQELPIPESHMERFIEARNALVMSLCDVD------ETLCDEYL 259


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,537,573
Number of Sequences: 5004
Number of extensions: 41454
Number of successful extensions: 110
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 83
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 104
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 466510270
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)