Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP13_F_J12
(918 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
L23647-8|AAK29993.1| 54|Caenorhabditis elegans Hypothetical pr... 40 0.002
L07144-2|AAK21439.1| 54|Caenorhabditis elegans Hypothetical pr... 40 0.002
AF016427-2|AAB65352.1| 54|Caenorhabditis elegans Hypothetical ... 40 0.003
AF000298-11|AAM97960.1| 518|Caenorhabditis elegans Prion-like-(... 38 0.008
AF000298-10|AAM97961.1| 539|Caenorhabditis elegans Prion-like-(... 38 0.008
AF000298-8|AAC48255.2| 524|Caenorhabditis elegans Prion-like-(q... 38 0.008
Z68301-5|CAA92620.1| 301|Caenorhabditis elegans Hypothetical pr... 33 0.22
V00148-1|CAA23464.1| 301|Caenorhabditis elegans protein ( Caeno... 33 0.22
J01048-1|AAA27990.1| 301|Caenorhabditis elegans protein ( C.ele... 33 0.22
AY347575-1|AAP97869.1| 301|Caenorhabditis elegans COLlagen stru... 33 0.22
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def... 33 0.29
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def... 33 0.29
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein. 33 0.29
Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical pr... 33 0.38
U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA bi... 33 0.38
U41557-6|AAA83307.1| 589|Caenorhabditis elegans Collagen sequen... 31 1.2
L25598-3|AAM15551.1| 759|Caenorhabditis elegans Calpain family ... 30 2.0
AF000193-3|AAB52890.1| 259|Caenorhabditis elegans Hypothetical ... 30 2.0
U58755-7|AAB00696.1| 136|Caenorhabditis elegans Hypothetical pr... 29 3.5
AL031629-6|CAA20980.2| 948|Caenorhabditis elegans Hypothetical ... 29 3.5
Z77655-1|CAB01137.1| 393|Caenorhabditis elegans Hypothetical pr... 29 4.7
U53153-1|AAC69039.4| 715|Caenorhabditis elegans Hypothetical pr... 29 4.7
AF040642-7|AAB94952.1| 329|Caenorhabditis elegans Collagen prot... 29 4.7
AF025467-2|AAN65301.1| 505|Caenorhabditis elegans Hypothetical ... 29 4.7
AF025467-1|AAB71039.2| 528|Caenorhabditis elegans Hypothetical ... 29 4.7
U41538-2|AAG00010.1| 997|Caenorhabditis elegans Hypothetical pr... 29 6.2
AF045646-2|AAK29827.1| 371|Caenorhabditis elegans Collagen prot... 29 6.2
U80439-8|AAB37646.3| 1724|Caenorhabditis elegans Hypothetical pr... 28 8.1
U39666-1|AAA80412.2| 644|Caenorhabditis elegans Nematode astaci... 28 8.1
D10877-1|BAA01645.1| 346|Caenorhabditis elegans hnRNP like prot... 28 8.1
AF038613-7|ABB51185.1| 308|Caenorhabditis elegans Human hnrnp a... 28 8.1
AF038613-5|AAB92051.1| 346|Caenorhabditis elegans Human hnrnp a... 28 8.1
>L23647-8|AAK29993.1| 54|Caenorhabditis elegans Hypothetical
protein ZC262.5 protein.
Length = 54
Score = 40.3 bits (90), Expect = 0.002
Identities = 17/27 (62%), Positives = 21/27 (77%)
Frame = +2
Query: 149 MSAWRQAGLTYINYSNIAAKVLRRVTK 229
M AWR AGL Y+ YS IAA+V+R+ TK
Sbjct: 1 MVAWRAAGLNYVRYSQIAAQVVRQCTK 27
>L07144-2|AAK21439.1| 54|Caenorhabditis elegans Hypothetical
protein R05D3.6 protein.
Length = 54
Score = 40.3 bits (90), Expect = 0.002
Identities = 17/27 (62%), Positives = 21/27 (77%)
Frame = +2
Query: 149 MSAWRQAGLTYINYSNIAAKVLRRVTK 229
M AWR AGL Y+ YS IAA+V+R+ TK
Sbjct: 1 MVAWRAAGLNYVRYSQIAAQVVRQCTK 27
>AF016427-2|AAB65352.1| 54|Caenorhabditis elegans Hypothetical
protein F32D1.2 protein.
Length = 54
Score = 39.5 bits (88), Expect = 0.003
Identities = 16/27 (59%), Positives = 20/27 (74%)
Frame = +2
Query: 149 MSAWRQAGLTYINYSNIAAKVLRRVTK 229
M AWR AGL Y+ YS IAA++ R+ TK
Sbjct: 1 MVAWRAAGLNYVRYSQIAAEITRKCTK 27
>AF000298-11|AAM97960.1| 518|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform b protein.
Length = 518
Score = 38.3 bits (85), Expect = 0.008
Identities = 24/62 (38%), Positives = 24/62 (38%), Gaps = 4/62 (6%)
Frame = +3
Query: 744 GVXPXPXTGIXXTPPGGXXGXXXXXGXPPPL---XPXPXXNPR-XPPXXSXPAPQGLPXX 911
G P P TG PP G G PPP P P PR PP S P PQ
Sbjct: 262 GSPPPPRTGSPPPPPTGSPPPPPAGGSPPPPRAGSPPPPPPPRGSPPTGSLPPPQAGGSP 321
Query: 912 PP 917
PP
Sbjct: 322 PP 323
Score = 31.1 bits (67), Expect = 1.2
Identities = 19/60 (31%), Positives = 21/60 (35%), Gaps = 2/60 (3%)
Frame = +3
Query: 744 GVXPXPXTGIXXTPPGGXXGXXXXXGXPPPLXPXPXXNPRXPPXXSXPAP--QGLPXXPP 917
G P +G PP G PP P P +P PP P P G P PP
Sbjct: 245 GSPPLAGSGSPPPPPAAGSPPPPRTGSPP---PPPTGSPPPPPAGGSPPPPRAGSPPPPP 301
>AF000298-10|AAM97961.1| 539|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform c protein.
Length = 539
Score = 38.3 bits (85), Expect = 0.008
Identities = 24/62 (38%), Positives = 24/62 (38%), Gaps = 4/62 (6%)
Frame = +3
Query: 744 GVXPXPXTGIXXTPPGGXXGXXXXXGXPPPL---XPXPXXNPR-XPPXXSXPAPQGLPXX 911
G P P TG PP G G PPP P P PR PP S P PQ
Sbjct: 283 GSPPPPRTGSPPPPPTGSPPPPPAGGSPPPPRAGSPPPPPPPRGSPPTGSLPPPQAGGSP 342
Query: 912 PP 917
PP
Sbjct: 343 PP 344
Score = 31.1 bits (67), Expect = 1.2
Identities = 19/60 (31%), Positives = 21/60 (35%), Gaps = 2/60 (3%)
Frame = +3
Query: 744 GVXPXPXTGIXXTPPGGXXGXXXXXGXPPPLXPXPXXNPRXPPXXSXPAP--QGLPXXPP 917
G P +G PP G PP P P +P PP P P G P PP
Sbjct: 266 GSPPLAGSGSPPPPPAAGSPPPPRTGSPP---PPPTGSPPPPPAGGSPPPPRAGSPPPPP 322
>AF000298-8|AAC48255.2| 524|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform a protein.
Length = 524
Score = 38.3 bits (85), Expect = 0.008
Identities = 24/62 (38%), Positives = 24/62 (38%), Gaps = 4/62 (6%)
Frame = +3
Query: 744 GVXPXPXTGIXXTPPGGXXGXXXXXGXPPPL---XPXPXXNPR-XPPXXSXPAPQGLPXX 911
G P P TG PP G G PPP P P PR PP S P PQ
Sbjct: 268 GSPPPPRTGSPPPPPTGSPPPPPAGGSPPPPRAGSPPPPPPPRGSPPTGSLPPPQAGGSP 327
Query: 912 PP 917
PP
Sbjct: 328 PP 329
Score = 31.1 bits (67), Expect = 1.2
Identities = 19/60 (31%), Positives = 21/60 (35%), Gaps = 2/60 (3%)
Frame = +3
Query: 744 GVXPXPXTGIXXTPPGGXXGXXXXXGXPPPLXPXPXXNPRXPPXXSXPAP--QGLPXXPP 917
G P +G PP G PP P P +P PP P P G P PP
Sbjct: 251 GSPPLAGSGSPPPPPAAGSPPPPRTGSPP---PPPTGSPPPPPAGGSPPPPRAGSPPPPP 307
>Z68301-5|CAA92620.1| 301|Caenorhabditis elegans Hypothetical
protein W01B6.7 protein.
Length = 301
Score = 33.5 bits (73), Expect = 0.22
Identities = 17/40 (42%), Positives = 17/40 (42%)
Frame = +3
Query: 786 PGGXXGXXXXXGXPPPLXPXPXXNPRXPPXXSXPAPQGLP 905
PGG G G P P P P NP P S P P G P
Sbjct: 151 PGGPPGPAGPAGPPGP--PGPDGNPGSPAGPSGPGPAGPP 188
>V00148-1|CAA23464.1| 301|Caenorhabditis elegans protein (
Caenorhabditis elegansgene Col-2 coding for a collagen.
).
Length = 301
Score = 33.5 bits (73), Expect = 0.22
Identities = 17/40 (42%), Positives = 17/40 (42%)
Frame = +3
Query: 786 PGGXXGXXXXXGXPPPLXPXPXXNPRXPPXXSXPAPQGLP 905
PGG G G P P P P NP P S P P G P
Sbjct: 151 PGGPPGPAGPAGPPGP--PGPDGNPGSPAGPSGPGPAGPP 188
>J01048-1|AAA27990.1| 301|Caenorhabditis elegans protein (
C.elegans (nematode)collagen 2 (col-2) gene, complete
cds. ).
Length = 301
Score = 33.5 bits (73), Expect = 0.22
Identities = 17/40 (42%), Positives = 17/40 (42%)
Frame = +3
Query: 786 PGGXXGXXXXXGXPPPLXPXPXXNPRXPPXXSXPAPQGLP 905
PGG G G P P P P NP P S P P G P
Sbjct: 151 PGGPPGPAGPAGPPGP--PGPDGNPGSPAGPSGPGPAGPP 188
>AY347575-1|AAP97869.1| 301|Caenorhabditis elegans COLlagen
structural gene, probabledorsal and ventral cuticle
component, from embryo to adult,but maximal in dauer
(28.0 kD) (col-2) protein.
Length = 301
Score = 33.5 bits (73), Expect = 0.22
Identities = 17/40 (42%), Positives = 17/40 (42%)
Frame = +3
Query: 786 PGGXXGXXXXXGXPPPLXPXPXXNPRXPPXXSXPAPQGLP 905
PGG G G P P P P NP P S P P G P
Sbjct: 151 PGGPPGPAGPAGPPGP--PGPDGNPGSPAGPSGPGPAGPP 188
>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
protein 1, isoformb protein.
Length = 1437
Score = 33.1 bits (72), Expect = 0.29
Identities = 20/53 (37%), Positives = 20/53 (37%)
Frame = +3
Query: 759 PXTGIXXTPPGGXXGXXXXXGXPPPLXPXPXXNPRXPPXXSXPAPQGLPXXPP 917
P TG PP G G PPP P P P PP P P G PP
Sbjct: 737 PITG-GPPPPPPPGGLPPISGGPPPPPPPPGGCPPPPP---PPPPGGFKGGPP 785
Score = 29.9 bits (64), Expect = 2.7
Identities = 19/54 (35%), Positives = 19/54 (35%), Gaps = 1/54 (1%)
Frame = +3
Query: 759 PXTGIXXTPPGGXXGXXXXXGXPPPLXPXPXXNP-RXPPXXSXPAPQGLPXXPP 917
P TG PP G G PPP P P P P P G P PP
Sbjct: 721 PITG-GPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPPP 773
Score = 28.7 bits (61), Expect = 6.2
Identities = 17/49 (34%), Positives = 17/49 (34%), Gaps = 3/49 (6%)
Frame = +3
Query: 780 TPPGGXXGXXXXXGXPPP---LXPXPXXNPRXPPXXSXPAPQGLPXXPP 917
T GG G PPP L P P PP P G P PP
Sbjct: 698 TSAGGSSALPPITGGPPPPPGLPPITGGPPPPPPPGGLPPITGGPPPPP 746
>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
protein 1, isoforma protein.
Length = 1435
Score = 33.1 bits (72), Expect = 0.29
Identities = 20/53 (37%), Positives = 20/53 (37%)
Frame = +3
Query: 759 PXTGIXXTPPGGXXGXXXXXGXPPPLXPXPXXNPRXPPXXSXPAPQGLPXXPP 917
P TG PP G G PPP P P P PP P P G PP
Sbjct: 737 PITG-GPPPPPPPGGLPPISGGPPPPPPPPGGCPPPPP---PPPPGGFKGGPP 785
Score = 29.9 bits (64), Expect = 2.7
Identities = 19/54 (35%), Positives = 19/54 (35%), Gaps = 1/54 (1%)
Frame = +3
Query: 759 PXTGIXXTPPGGXXGXXXXXGXPPPLXPXPXXNP-RXPPXXSXPAPQGLPXXPP 917
P TG PP G G PPP P P P P P G P PP
Sbjct: 721 PITG-GPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPPP 773
Score = 28.7 bits (61), Expect = 6.2
Identities = 17/49 (34%), Positives = 17/49 (34%), Gaps = 3/49 (6%)
Frame = +3
Query: 780 TPPGGXXGXXXXXGXPPP---LXPXPXXNPRXPPXXSXPAPQGLPXXPP 917
T GG G PPP L P P PP P G P PP
Sbjct: 698 TSAGGSSALPPITGGPPPPPGLPPITGGPPPPPPPGGLPPITGGPPPPP 746
>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
Length = 1018
Score = 33.1 bits (72), Expect = 0.29
Identities = 20/53 (37%), Positives = 20/53 (37%)
Frame = +3
Query: 759 PXTGIXXTPPGGXXGXXXXXGXPPPLXPXPXXNPRXPPXXSXPAPQGLPXXPP 917
P TG PP G G PPP P P P PP P P G PP
Sbjct: 320 PITG-GPPPPPPPGGLPPISGGPPPPPPPPGGCPPPPP---PPPPGGFKGGPP 368
Score = 29.9 bits (64), Expect = 2.7
Identities = 19/54 (35%), Positives = 19/54 (35%), Gaps = 1/54 (1%)
Frame = +3
Query: 759 PXTGIXXTPPGGXXGXXXXXGXPPPLXPXPXXNP-RXPPXXSXPAPQGLPXXPP 917
P TG PP G G PPP P P P P P G P PP
Sbjct: 304 PITG-GPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPPP 356
Score = 28.7 bits (61), Expect = 6.2
Identities = 17/49 (34%), Positives = 17/49 (34%), Gaps = 3/49 (6%)
Frame = +3
Query: 780 TPPGGXXGXXXXXGXPPP---LXPXPXXNPRXPPXXSXPAPQGLPXXPP 917
T GG G PPP L P P PP P G P PP
Sbjct: 281 TSAGGSSALPPITGGPPPPPGLPPITGGPPPPPPPGGLPPITGGPPPPP 329
>Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical
protein C08B11.5 protein.
Length = 388
Score = 32.7 bits (71), Expect = 0.38
Identities = 16/55 (29%), Positives = 18/55 (32%)
Frame = +3
Query: 753 PXPXTGIXXTPPGGXXGXXXXXGXPPPLXPXPXXNPRXPPXXSXPAPQGLPXXPP 917
P P + PP PPP P PP P P G+P PP
Sbjct: 264 PPPPPSVTPMPPPMPPTPGMTPRPPPPPSSGMWPPPPPPPPGRTPGPPGMPGMPP 318
Score = 29.9 bits (64), Expect = 2.7
Identities = 21/66 (31%), Positives = 23/66 (34%), Gaps = 3/66 (4%)
Frame = +3
Query: 729 GRVXGGVXPXPXTGIXXTPPGGXXGXXXXXGXPPPLXP---XPXXNPRXPPXXSXPAPQG 899
GR G P G+ PP G G PPP P P P PP A G
Sbjct: 305 GRTPG---PPGMPGMPPPPPPSRFGPPGMGGMPPPPPPGMRYPGGMPPPPPPRYPSAGPG 361
Query: 900 LPXXPP 917
+ PP
Sbjct: 362 MYPPPP 367
Score = 29.5 bits (63), Expect = 3.5
Identities = 20/64 (31%), Positives = 23/64 (35%), Gaps = 9/64 (14%)
Frame = +3
Query: 753 PXPXTGI----XXTPPGGXXGXXXXXGXPPPLXPXPXXNP-----RXPPXXSXPAPQGLP 905
P P +G+ PPG G G PPP P P PP P G+P
Sbjct: 289 PPPSSGMWPPPPPPPPGRTPGPPGMPGMPPPPPPSRFGPPGMGGMPPPPPPGMRYPGGMP 348
Query: 906 XXPP 917
PP
Sbjct: 349 PPPP 352
>U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA
binding protein protein.
Length = 398
Score = 32.7 bits (71), Expect = 0.38
Identities = 16/55 (29%), Positives = 18/55 (32%)
Frame = +3
Query: 753 PXPXTGIXXTPPGGXXGXXXXXGXPPPLXPXPXXNPRXPPXXSXPAPQGLPXXPP 917
P P + PP PPP P PP P P G+P PP
Sbjct: 274 PPPPPSVTPMPPPMPPTPGMTPRPPPPPSSGMWPPPPPPPPGRTPGPPGMPGMPP 328
Score = 29.9 bits (64), Expect = 2.7
Identities = 21/66 (31%), Positives = 23/66 (34%), Gaps = 3/66 (4%)
Frame = +3
Query: 729 GRVXGGVXPXPXTGIXXTPPGGXXGXXXXXGXPPPLXP---XPXXNPRXPPXXSXPAPQG 899
GR G P G+ PP G G PPP P P P PP A G
Sbjct: 315 GRTPG---PPGMPGMPPPPPPSRFGPPGMGGMPPPPPPGMRYPGGMPPPPPPRYPSAGPG 371
Query: 900 LPXXPP 917
+ PP
Sbjct: 372 MYPPPP 377
Score = 29.5 bits (63), Expect = 3.5
Identities = 20/64 (31%), Positives = 23/64 (35%), Gaps = 9/64 (14%)
Frame = +3
Query: 753 PXPXTGI----XXTPPGGXXGXXXXXGXPPPLXPXPXXNP-----RXPPXXSXPAPQGLP 905
P P +G+ PPG G G PPP P P PP P G+P
Sbjct: 299 PPPSSGMWPPPPPPPPGRTPGPPGMPGMPPPPPPSRFGPPGMGGMPPPPPPGMRYPGGMP 358
Query: 906 XXPP 917
PP
Sbjct: 359 PPPP 362
>U41557-6|AAA83307.1| 589|Caenorhabditis elegans Collagen sequence
x-hybridizingprotein 1 protein.
Length = 589
Score = 31.1 bits (67), Expect = 1.2
Identities = 23/79 (29%), Positives = 24/79 (30%), Gaps = 1/79 (1%)
Frame = +3
Query: 684 PPXLXXPFXFFXXXGGRVXGGVXPXPXTGIXXTPPGGXXGXXXXXGXPPPLXPXPXXNPR 863
PP P F G G P P P GG G G PP P +P
Sbjct: 431 PPSGGPPGPF--NPSGAPPSGGPPGPFNPSGAPPSGGPPGPFNPSGAPPSGGPPGPFDPS 488
Query: 864 -XPPXXSXPAPQGLPXXPP 917
PP P P PP
Sbjct: 489 GAPPSGGPPGPFNPSGAPP 507
Score = 30.7 bits (66), Expect = 1.5
Identities = 23/79 (29%), Positives = 24/79 (30%), Gaps = 1/79 (1%)
Frame = +3
Query: 684 PPXLXXPFXFFXXXGGRVXGGVXPXPXTGIXXTPPGGXXGXXXXXGXPPPLXPXPXXNPR 863
PP P F G G P P P GG G G PP P +P
Sbjct: 281 PPSGGPPGPF--DPSGAPPSGGPPGPFDPSGAQPSGGPPGPFNPSGAPPSGGPPGPFDPS 338
Query: 864 -XPPXXSXPAPQGLPXXPP 917
PP P P PP
Sbjct: 339 GAPPSGGPPGPFNPSGAPP 357
Score = 30.7 bits (66), Expect = 1.5
Identities = 21/68 (30%), Positives = 22/68 (32%), Gaps = 4/68 (5%)
Frame = +3
Query: 714 FXXXGGRVXGGVXPXPXTGIXXTPPGGXXGXXXXXGXPPPLXPXPXXNPRXPPXXSXPA- 890
F G + GG P P P GG G G PP P NP P P
Sbjct: 305 FDPSGAQPSGG-PPGPFNPSGAPPSGGPPGPFDPSGAPPSGGPPGPFNPSGAPPSGGPPG 363
Query: 891 ---PQGLP 905
P G P
Sbjct: 364 PFDPSGAP 371
Score = 30.7 bits (66), Expect = 1.5
Identities = 23/79 (29%), Positives = 24/79 (30%), Gaps = 1/79 (1%)
Frame = +3
Query: 684 PPXLXXPFXFFXXXGGRVXGGVXPXPXTGIXXTPPGGXXGXXXXXGXPPPLXPXPXXNPR 863
PP P F G G P P P GG G G PP P +P
Sbjct: 326 PPSGGPPGPF--DPSGAPPSGGPPGPFNPSGAPPSGGPPGPFDPSGAPPSGGPPGPFDPS 383
Query: 864 -XPPXXSXPAPQGLPXXPP 917
PP P P PP
Sbjct: 384 GAPPSGGPPGPFDPSGAPP 402
Score = 30.7 bits (66), Expect = 1.5
Identities = 23/79 (29%), Positives = 24/79 (30%), Gaps = 1/79 (1%)
Frame = +3
Query: 684 PPXLXXPFXFFXXXGGRVXGGVXPXPXTGIXXTPPGGXXGXXXXXGXPPPLXPXPXXNPR 863
PP P F G G P P P GG G G PP P +P
Sbjct: 341 PPSGGPPGPF--NPSGAPPSGGPPGPFDPSGAPPSGGPPGPFDPSGAPPSGGPPGPFDPS 398
Query: 864 -XPPXXSXPAPQGLPXXPP 917
PP P P PP
Sbjct: 399 GAPPSGGPPGPFNPSGAPP 417
Score = 30.3 bits (65), Expect = 2.0
Identities = 23/77 (29%), Positives = 23/77 (29%), Gaps = 4/77 (5%)
Frame = +3
Query: 687 PXLXXPFXFFXXXGGRVXGGVXPXPXTGIXXTPPGGXXGXXXXXGXPPPLXPXPXXNPRX 866
P P F G GG P P P GG G G PP P NP
Sbjct: 206 PPSGGPTGPFDPSGAPPSGG-PPGPFNPSGAPPSGGPPGPFDPSGAPPSGGPPGPFNPSG 264
Query: 867 PPXXSXPA----PQGLP 905
P P P G P
Sbjct: 265 APPSGGPPGPFDPSGAP 281
Score = 30.3 bits (65), Expect = 2.0
Identities = 23/79 (29%), Positives = 24/79 (30%), Gaps = 1/79 (1%)
Frame = +3
Query: 684 PPXLXXPFXFFXXXGGRVXGGVXPXPXTGIXXTPPGGXXGXXXXXGXPPPLXPXPXXNPR 863
PP P F G G P P P GG G G PP P +P
Sbjct: 221 PPSGGPPGPF--NPSGAPPSGGPPGPFDPSGAPPSGGPPGPFNPSGAPPSGGPPGPFDPS 278
Query: 864 -XPPXXSXPAPQGLPXXPP 917
PP P P PP
Sbjct: 279 GAPPSGGPPGPFDPSGAPP 297
Score = 29.9 bits (64), Expect = 2.7
Identities = 19/64 (29%), Positives = 19/64 (29%), Gaps = 1/64 (1%)
Frame = +3
Query: 729 GRVXGGVXPXPXTGIXXTPPGGXXGXXXXXGXPPPLXPXPXXNPR-XPPXXSXPAPQGLP 905
G G P P P GG G G PP P P PP P P
Sbjct: 144 GAPPSGGPPGPFDPSGAPPSGGPPGLFDPSGAPPSGGPPGPFGPSGAPPSGGPPGPFNPS 203
Query: 906 XXPP 917
PP
Sbjct: 204 EAPP 207
Score = 29.9 bits (64), Expect = 2.7
Identities = 23/78 (29%), Positives = 23/78 (29%), Gaps = 4/78 (5%)
Frame = +3
Query: 684 PPXLXXPFXFFXXXGGRVXGGVXPXPXTGIXXTPPGGXXGXXXXXGXPPPLXPXPXXNPR 863
PP P F G G P P P GG G G PP P NP
Sbjct: 176 PPSGGPPGPF--GPSGAPPSGGPPGPFNPSEAPPSGGPTGPFDPSGAPPSGGPPGPFNPS 233
Query: 864 XPPXXSXPA----PQGLP 905
P P P G P
Sbjct: 234 GAPPSGGPPGPFDPSGAP 251
Score = 29.9 bits (64), Expect = 2.7
Identities = 19/64 (29%), Positives = 20/64 (31%), Gaps = 1/64 (1%)
Frame = +3
Query: 729 GRVXGGVXPXPXTGIXXTPPGGXXGXXXXXGXPPPLXPXPXXNPR-XPPXXSXPAPQGLP 905
G G P P P GG G G PP P +P PP P P
Sbjct: 324 GAPPSGGPPGPFDPSGAPPSGGPPGPFNPSGAPPSGGPPGPFDPSGAPPSGGPPGPFDPS 383
Query: 906 XXPP 917
PP
Sbjct: 384 GAPP 387
Score = 29.9 bits (64), Expect = 2.7
Identities = 23/78 (29%), Positives = 23/78 (29%), Gaps = 4/78 (5%)
Frame = +3
Query: 684 PPXLXXPFXFFXXXGGRVXGGVXPXPXTGIXXTPPGGXXGXXXXXGXPPPLXPXPXXNPR 863
PP P F G G P P P GG G G PP P NP
Sbjct: 386 PPSGGPPGPF--DPSGAPPSGGPPGPFNPSGAPPSGGPPGPFNPSGAPPSGGPPGPFNPS 443
Query: 864 XPPXXSXPA----PQGLP 905
P P P G P
Sbjct: 444 GAPPSGGPPGPFNPSGAP 461
Score = 29.9 bits (64), Expect = 2.7
Identities = 23/78 (29%), Positives = 23/78 (29%), Gaps = 4/78 (5%)
Frame = +3
Query: 684 PPXLXXPFXFFXXXGGRVXGGVXPXPXTGIXXTPPGGXXGXXXXXGXPPPLXPXPXXNPR 863
PP P F G G P P P GG G G PP P NP
Sbjct: 401 PPSGGPPGPF--NPSGAPPSGGPPGPFNPSGAPPSGGPPGPFNPSGAPPSGGPPGPFNPS 458
Query: 864 XPPXXSXPA----PQGLP 905
P P P G P
Sbjct: 459 GAPPSGGPPGPFNPSGAP 476
Score = 29.9 bits (64), Expect = 2.7
Identities = 23/78 (29%), Positives = 23/78 (29%), Gaps = 4/78 (5%)
Frame = +3
Query: 684 PPXLXXPFXFFXXXGGRVXGGVXPXPXTGIXXTPPGGXXGXXXXXGXPPPLXPXPXXNPR 863
PP P F G G P P P GG G G PP P NP
Sbjct: 416 PPSGGPPGPF--NPSGAPPSGGPPGPFNPSGAPPSGGPPGPFNPSGAPPSGGPPGPFNPS 473
Query: 864 XPPXXSXPA----PQGLP 905
P P P G P
Sbjct: 474 GAPPSGGPPGPFDPSGAP 491
Score = 29.9 bits (64), Expect = 2.7
Identities = 23/78 (29%), Positives = 23/78 (29%), Gaps = 4/78 (5%)
Frame = +3
Query: 684 PPXLXXPFXFFXXXGGRVXGGVXPXPXTGIXXTPPGGXXGXXXXXGXPPPLXPXPXXNPR 863
PP P F G G P P P GG G G PP P NP
Sbjct: 446 PPSGGPPGPF--NPSGAPPSGGPPGPFNPSGAPPSGGPPGPFDPSGAPPSGGPPGPFNPS 503
Query: 864 XPPXXSXPA----PQGLP 905
P P P G P
Sbjct: 504 GAPPSGGPPGPFDPSGAP 521
Score = 29.5 bits (63), Expect = 3.5
Identities = 23/78 (29%), Positives = 23/78 (29%), Gaps = 4/78 (5%)
Frame = +3
Query: 684 PPXLXXPFXFFXXXGGRVXGGVXPXPXTGIXXTPPGGXXGXXXXXGXPPPLXPXPXXNPR 863
PP P F G G P P P GG G G PP P NP
Sbjct: 356 PPSGGPPGPF--DPSGAPPSGGPPGPFDPSGAPPSGGPPGPFDPSGAPPSGGPPGPFNPS 413
Query: 864 XPPXXSXPA----PQGLP 905
P P P G P
Sbjct: 414 GAPPSGGPPGPFNPSGAP 431
Score = 29.5 bits (63), Expect = 3.5
Identities = 23/78 (29%), Positives = 23/78 (29%), Gaps = 4/78 (5%)
Frame = +3
Query: 684 PPXLXXPFXFFXXXGGRVXGGVXPXPXTGIXXTPPGGXXGXXXXXGXPPPLXPXPXXNPR 863
PP P F G G P P P GG G G PP P NP
Sbjct: 371 PPSGGPPGPF--DPSGAPPSGGPPGPFDPSGAPPSGGPPGPFNPSGAPPSGGPPGPFNPS 428
Query: 864 XPPXXSXPA----PQGLP 905
P P P G P
Sbjct: 429 GAPPSGGPPGPFNPSGAP 446
Score = 29.1 bits (62), Expect = 4.7
Identities = 21/71 (29%), Positives = 22/71 (30%), Gaps = 1/71 (1%)
Frame = +3
Query: 684 PPXLXXPFXFFXXXGGRVXGGVXPXPXTGIXXTPPGGXXGXXXXXGXPPPLXPXPXXNPR 863
PP P F G G P P P GG G G PP P +P
Sbjct: 236 PPSGGPPGPF--DPSGAPPSGGPPGPFNPSGAPPSGGPPGPFDPSGAPPSGGPPGPFDPS 293
Query: 864 -XPPXXSXPAP 893
PP P P
Sbjct: 294 GAPPSGGPPGP 304
Score = 29.1 bits (62), Expect = 4.7
Identities = 23/78 (29%), Positives = 24/78 (30%)
Frame = +3
Query: 684 PPXLXXPFXFFXXXGGRVXGGVXPXPXTGIXXTPPGGXXGXXXXXGXPPPLXPXPXXNPR 863
PP P F G G P P P GG G G PP P +P
Sbjct: 461 PPSGGPPGPF--NPSGAPPSGGPPGPFDPSGAPPSGGPPGPFNPSGAPPSGGPPGPFDPS 518
Query: 864 XPPXXSXPAPQGLPXXPP 917
P P P LP P
Sbjct: 519 GAPPSGMP-PVPLPTDLP 535
Score = 28.3 bits (60), Expect = 8.1
Identities = 22/78 (28%), Positives = 23/78 (29%), Gaps = 1/78 (1%)
Frame = +3
Query: 687 PXLXXPFXFFXXXGGRVXGGVXPXPXTGIXXTPPGGXXGXXXXXGXPPPLXPXPXXNPR- 863
P P F G GG P P P GG G PP P +P
Sbjct: 161 PPSGGPPGLFDPSGAPPSGG-PPGPFGPSGAPPSGGPPGPFNPSEAPPSGGPTGPFDPSG 219
Query: 864 XPPXXSXPAPQGLPXXPP 917
PP P P PP
Sbjct: 220 APPSGGPPGPFNPSGAPP 237
>L25598-3|AAM15551.1| 759|Caenorhabditis elegans Calpain family
protein 1, isoform d protein.
Length = 759
Score = 30.3 bits (65), Expect = 2.0
Identities = 14/31 (45%), Positives = 14/31 (45%)
Frame = -3
Query: 916 GGXXGSPXGAGXEXXGGXRGFXWGXGXXGGG 824
GG G G G GG GF G G GGG
Sbjct: 53 GGGGGGGGGGGGGFGGGNGGFGGGGGGSGGG 83
>AF000193-3|AAB52890.1| 259|Caenorhabditis elegans Hypothetical
protein T20B6.3 protein.
Length = 259
Score = 30.3 bits (65), Expect = 2.0
Identities = 18/58 (31%), Positives = 21/58 (36%)
Frame = -3
Query: 913 GXXGSPXGAGXEXXGGXRGFXWGXGXXGGGXPXXXXXPXFPPGGVXXIPVXGXGXTPP 740
G G G G GG G +G G GG P + PGG + G G P
Sbjct: 194 GGYGGGMGGGGYGGGGMGGGGYGGGGDGGYGPSGGYGGGYGPGGGYGMGGGGGGGGCP 251
>U58755-7|AAB00696.1| 136|Caenorhabditis elegans Hypothetical
protein C34D4.11 protein.
Length = 136
Score = 29.5 bits (63), Expect = 3.5
Identities = 13/30 (43%), Positives = 13/30 (43%)
Frame = -3
Query: 916 GGXXGSPXGAGXEXXGGXRGFXWGXGXXGG 827
GG G G G GG RG WG GG
Sbjct: 50 GGGPGWGRGGGGSGWGGGRGGGWGNNGGGG 79
>AL031629-6|CAA20980.2| 948|Caenorhabditis elegans Hypothetical
protein Y106G6D.7 protein.
Length = 948
Score = 29.5 bits (63), Expect = 3.5
Identities = 13/32 (40%), Positives = 15/32 (46%), Gaps = 1/32 (3%)
Frame = +3
Query: 825 PPPLXPXPXXNPRX-PPXXSXPAPQGLPXXPP 917
PPP P N R PP + P P +P PP
Sbjct: 197 PPPSKPADLSNTRSLPPVNNPPPPHPIPQFPP 228
>Z77655-1|CAB01137.1| 393|Caenorhabditis elegans Hypothetical
protein C56A3.1 protein.
Length = 393
Score = 29.1 bits (62), Expect = 4.7
Identities = 19/59 (32%), Positives = 20/59 (33%)
Frame = -3
Query: 916 GGXXGSPXGAGXEXXGGXRGFXWGXGXXGGGXPXXXXXPXFPPGGVXXIPVXGXGXTPP 740
GG G G G GG G G G GGG F V +P G PP
Sbjct: 103 GGGGGCGGGGGGGCGGGGGGGCGGGGGGGGGGYASGGSGGFASAPV-SLPAPSYGGPPP 160
>U53153-1|AAC69039.4| 715|Caenorhabditis elegans Hypothetical
protein T19A5.3a protein.
Length = 715
Score = 29.1 bits (62), Expect = 4.7
Identities = 15/37 (40%), Positives = 15/37 (40%)
Frame = -3
Query: 892 GAGXEXXGGXRGFXWGXGXXGGGXPXXXXXPXFPPGG 782
G G GG GF G G G G P P PP G
Sbjct: 484 GGGGGFGGGGGGFGGGGGGFGSGSPFGGAAPS-PPSG 519
>AF040642-7|AAB94952.1| 329|Caenorhabditis elegans Collagen protein
68 protein.
Length = 329
Score = 29.1 bits (62), Expect = 4.7
Identities = 20/62 (32%), Positives = 20/62 (32%), Gaps = 2/62 (3%)
Frame = +3
Query: 735 VXGGVXPXPXTGIXXTPPG--GXXGXXXXXGXPPPLXPXPXXNPRXPPXXSXPAPQGLPX 908
V G V P T PPG G G G P P P P P P G P
Sbjct: 244 VPGQVIEVPGTPGPAGPPGPPGPIGPPGQPGAPGSSQPGPQGPPGDPGIDGAPGNPGSPG 303
Query: 909 XP 914
P
Sbjct: 304 EP 305
>AF025467-2|AAN65301.1| 505|Caenorhabditis elegans Hypothetical
protein R148.5b protein.
Length = 505
Score = 29.1 bits (62), Expect = 4.7
Identities = 17/50 (34%), Positives = 17/50 (34%)
Frame = +3
Query: 744 GVXPXPXTGIXXTPPGGXXGXXXXXGXPPPLXPXPXXNPRXPPXXSXPAP 893
G P P G PP G G PPP P P PP P P
Sbjct: 294 GFFPPPPRGHFPPPPPHFMGR----GMPPPFMPPPPHFGMGPPRGFMPPP 339
>AF025467-1|AAB71039.2| 528|Caenorhabditis elegans Hypothetical
protein R148.5a protein.
Length = 528
Score = 29.1 bits (62), Expect = 4.7
Identities = 17/50 (34%), Positives = 17/50 (34%)
Frame = +3
Query: 744 GVXPXPXTGIXXTPPGGXXGXXXXXGXPPPLXPXPXXNPRXPPXXSXPAP 893
G P P G PP G G PPP P P PP P P
Sbjct: 294 GFFPPPPRGHFPPPPPHFMGR----GMPPPFMPPPPHFGMGPPRGFMPPP 339
>U41538-2|AAG00010.1| 997|Caenorhabditis elegans Hypothetical
protein R04E5.8a protein.
Length = 997
Score = 28.7 bits (61), Expect = 6.2
Identities = 20/60 (33%), Positives = 22/60 (36%), Gaps = 1/60 (1%)
Frame = +3
Query: 741 GGVXPXPXTGIXX-TPPGGXXGXXXXXGXPPPLXPXPXXNPRXPPXXSXPAPQGLPXXPP 917
G P P G +PP G P P P PR PP S P P+ P PP
Sbjct: 107 GHQVPAPQHGDHEASPPPPPPPRKSRAGGSSPPPPPPPRVPRTPPPRS-PPPRRPPMTPP 165
>AF045646-2|AAK29827.1| 371|Caenorhabditis elegans Collagen protein
103 protein.
Length = 371
Score = 28.7 bits (61), Expect = 6.2
Identities = 15/44 (34%), Positives = 15/44 (34%)
Frame = +3
Query: 783 PPGGXXGXXXXXGXPPPLXPXPXXNPRXPPXXSXPAPQGLPXXP 914
PPG G PP P P P P P P G P P
Sbjct: 266 PPGNNGAPGGGYGVGPPGPPGPSGRPGAP---GQPGPDGQPGAP 306
>U80439-8|AAB37646.3| 1724|Caenorhabditis elegans Hypothetical
protein C01G8.9a protein.
Length = 1724
Score = 28.3 bits (60), Expect = 8.1
Identities = 13/38 (34%), Positives = 14/38 (36%)
Frame = +3
Query: 786 PGGXXGXXXXXGXPPPLXPXPXXNPRXPPXXSXPAPQG 899
PGG G P P P P PP P+P G
Sbjct: 804 PGGPRPPYPYPGGPVPPGPPQNRMPPPPPAQGAPSPSG 841
>U39666-1|AAA80412.2| 644|Caenorhabditis elegans Nematode astacin
protease protein33 protein.
Length = 644
Score = 28.3 bits (60), Expect = 8.1
Identities = 14/35 (40%), Positives = 15/35 (42%), Gaps = 4/35 (11%)
Frame = +3
Query: 825 PPPLXPXPXXNPRXPPXXSXP----APQGLPXXPP 917
PPP P P + PP P P GLP PP
Sbjct: 50 PPPFGPPPPWDRPPPPWRRPPWHRRPPWGLPPPPP 84
>D10877-1|BAA01645.1| 346|Caenorhabditis elegans hnRNP like protein
protein.
Length = 346
Score = 28.3 bits (60), Expect = 8.1
Identities = 16/44 (36%), Positives = 16/44 (36%)
Frame = -3
Query: 913 GXXGSPXGAGXEXXGGXRGFXWGXGXXGGGXPXXXXXPXFPPGG 782
G G P G G GG G W G GGG P GG
Sbjct: 239 GAYGGPGGGGQGGYGGDYGGGW--GQQGGGGQGGWGGPQQQQGG 280
>AF038613-7|ABB51185.1| 308|Caenorhabditis elegans Human hnrnp a1
homolog protein1, isoform c protein.
Length = 308
Score = 28.3 bits (60), Expect = 8.1
Identities = 16/44 (36%), Positives = 16/44 (36%)
Frame = -3
Query: 913 GXXGSPXGAGXEXXGGXRGFXWGXGXXGGGXPXXXXXPXFPPGG 782
G G P G G GG G W G GGG P GG
Sbjct: 201 GAYGGPGGGGQGGYGGDYGGGW--GQQGGGGQGGWGGPQQQQGG 242
>AF038613-5|AAB92051.1| 346|Caenorhabditis elegans Human hnrnp a1
homolog protein1, isoform a protein.
Length = 346
Score = 28.3 bits (60), Expect = 8.1
Identities = 16/44 (36%), Positives = 16/44 (36%)
Frame = -3
Query: 913 GXXGSPXGAGXEXXGGXRGFXWGXGXXGGGXPXXXXXPXFPPGG 782
G G P G G GG G W G GGG P GG
Sbjct: 239 GAYGGPGGGGQGGYGGDYGGGW--GQQGGGGQGGWGGPQQQQGG 280
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,430,067
Number of Sequences: 27780
Number of extensions: 325624
Number of successful extensions: 1743
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 869
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1589
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2349764032
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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