Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP13_F_J11
         (897 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC29A4.19c |||P-type ATPase |Schizosaccharomyces pombe|chr 1||...    27   2.7  
SPBC4F6.13c |||WD repeat/BOP1NT protein|Schizosaccharomyces pomb...    27   3.6  
SPAC1783.02c |vps66||acyltransferase |Schizosaccharomyces pombe|...    26   8.4  

>SPAC29A4.19c |||P-type ATPase |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1096

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 17/63 (26%), Positives = 27/63 (42%)
 Frame = +2

Query: 374  QLCRRFGFSGGICVGGQCECGNIHRNADQNENQSTLENCDMRECDQSCRRIGFPGGVCVN 553
            +LC+++G   G C  G  +C  + + AD   + S  E C         + I     V + 
Sbjct: 824  ELCQKYGCKVGFCGDGANDCIAL-KQADVGVSLSDSEACAAASFVSKKKSIKDVFNVLLE 882

Query: 554  GRC 562
            GRC
Sbjct: 883  GRC 885


>SPBC4F6.13c |||WD repeat/BOP1NT protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 736

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 17/67 (25%), Positives = 32/67 (47%), Gaps = 2/67 (2%)
 Frame = +2

Query: 548 VNGRC--KCDIIANNNIADLDEDRSSLKDCXNPTMRSSRVAELDFLXVCASTXPCNATLY 721
           + GRC  KC + +  N  ++D D  ++ +  + + +SS +  L +  +  S  P  A   
Sbjct: 409 MTGRCVWKCSLDSFGNAHNIDSDEDAVNESLSHSTKSSIIQSLAWGPL--SDSPVLAVAV 466

Query: 722 PTTIYLI 742
             T+Y I
Sbjct: 467 DETVYFI 473


>SPAC1783.02c |vps66||acyltransferase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 328

 Score = 25.8 bits (54), Expect = 8.4
 Identities = 9/13 (69%), Positives = 9/13 (69%)
 Frame = +2

Query: 530 FPGGVCVNGRCKC 568
           FP GVC NGR  C
Sbjct: 214 FPEGVCTNGRALC 226


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,661,894
Number of Sequences: 5004
Number of extensions: 76510
Number of successful extensions: 173
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 167
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 173
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 452494940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)