Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP13_F_J11
(897 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_08_0028 + 27782072-27782171,27782427-27782620 35 0.076
11_08_0013 + 27629086-27629185,27629441-27629634 35 0.076
08_02_1156 - 24760332-24761530,24762757-24763648 32 0.71
01_01_0409 - 3084821-3084988,3085069-3085155,3085270-3085476,308... 31 1.2
02_05_0930 - 32801737-32801936,32802038-32802107 30 2.9
05_07_0345 - 29417029-29417769 29 3.8
05_03_0244 + 10857139-10857516 29 3.8
03_02_0141 + 5867591-5867736,5867926-5868010,5868096-5868137,586... 29 5.0
02_05_0929 - 32798477-32798679,32798833-32798917 29 6.6
01_03_0269 + 14442886-14442978,14443306-14443377,14443551-144440... 29 6.6
>11_08_0028 + 27782072-27782171,27782427-27782620
Length = 97
Score = 35.1 bits (77), Expect = 0.076
Identities = 17/40 (42%), Positives = 20/40 (50%), Gaps = 3/40 (7%)
Frame = +2
Query: 479 LENCDMRECDQSCRRIGFPGGVC---VNGRCKCDIIANNN 589
L NCDM +C C+ GF GG+C N C C A N
Sbjct: 45 LVNCDMNKCMSDCQIKGFNGGLCDGESNDHCCCTDEARTN 84
Score = 33.9 bits (74), Expect = 0.18
Identities = 19/73 (26%), Positives = 31/73 (42%), Gaps = 3/73 (4%)
Frame = +2
Query: 98 SILCFVSVLCTVHASVININIFDEGLNTNKTSIKLRNCDFMACDQLCRELGFPSGACDGE 277
++ F S++ + + + G + + L NCD C C+ GF G CDGE
Sbjct: 11 AVFFFTSLMVMATVNFSSGHTTQGGYGEMDSCMVLVNCDMNKCMSDCQIKGFNGGLCDGE 70
Query: 278 ---QCVCDNFLKT 307
C C + +T
Sbjct: 71 SNDHCCCTDEART 83
Score = 29.9 bits (64), Expect = 2.9
Identities = 12/38 (31%), Positives = 22/38 (57%)
Frame = +2
Query: 305 TRGSHTITDHRLPQLDCTTSECDQLCRRFGFSGGICVG 418
T+G + D + ++C ++C C+ GF+GG+C G
Sbjct: 32 TQGGYGEMDSCMVLVNCDMNKCMSDCQIKGFNGGLCDG 69
>11_08_0013 + 27629086-27629185,27629441-27629634
Length = 97
Score = 35.1 bits (77), Expect = 0.076
Identities = 17/40 (42%), Positives = 20/40 (50%), Gaps = 3/40 (7%)
Frame = +2
Query: 479 LENCDMRECDQSCRRIGFPGGVC---VNGRCKCDIIANNN 589
L NCDM +C C+ GF GG+C N C C A N
Sbjct: 45 LVNCDMNKCMSDCQIKGFNGGLCDGESNDHCCCTDEARTN 84
Score = 33.9 bits (74), Expect = 0.18
Identities = 19/73 (26%), Positives = 31/73 (42%), Gaps = 3/73 (4%)
Frame = +2
Query: 98 SILCFVSVLCTVHASVININIFDEGLNTNKTSIKLRNCDFMACDQLCRELGFPSGACDGE 277
++ F S++ + + + G + + L NCD C C+ GF G CDGE
Sbjct: 11 AVFFFTSLMVMATVNFSSGHTTQGGYGEMDSCMVLVNCDMNKCMSDCQIKGFNGGLCDGE 70
Query: 278 ---QCVCDNFLKT 307
C C + +T
Sbjct: 71 SNDHCCCTDEART 83
Score = 29.9 bits (64), Expect = 2.9
Identities = 12/38 (31%), Positives = 22/38 (57%)
Frame = +2
Query: 305 TRGSHTITDHRLPQLDCTTSECDQLCRRFGFSGGICVG 418
T+G + D + ++C ++C C+ GF+GG+C G
Sbjct: 32 TQGGYGEMDSCMVLVNCDMNKCMSDCQIKGFNGGLCDG 69
>08_02_1156 - 24760332-24761530,24762757-24763648
Length = 696
Score = 31.9 bits (69), Expect = 0.71
Identities = 18/34 (52%), Positives = 20/34 (58%)
Frame = +2
Query: 245 LGFPSGACDGEQCVCDNFLKTRGSHTITDHRLPQ 346
LG S CDG+Q VCD +L TRG ITD Q
Sbjct: 652 LGTTSNRCDGDQIVCD-YLSTRG---ITDESTRQ 681
>01_01_0409 -
3084821-3084988,3085069-3085155,3085270-3085476,
3085904-3085985,3086085-3086275,3086410-3086616,
3086709-3086871,3087905-3087960,3088035-3088148,
3088599-3089807
Length = 827
Score = 31.1 bits (67), Expect = 1.2
Identities = 24/99 (24%), Positives = 39/99 (39%), Gaps = 3/99 (3%)
Frame = +2
Query: 236 CRELGFPSGACDGEQCVCDNFL-KTRGSHTITDHRLPQLDCTTSECDQLCRRFGFSGGIC 412
C + +PS CD E C + K G H+ P+ C C + CR +
Sbjct: 342 CGKKDYPSLDCDAEAATCGSTCEKVLGCGR---HKCPE-RCHRGSCVETCR-------LV 390
Query: 413 VGGQCECGNIHRNADQNENQSTLENCD-MRECDQ-SCRR 523
+ C CG + + + + C +R C + +CRR
Sbjct: 391 ITKSCRCGGLKKEVPCYQELTCERKCQRLRNCGRHACRR 429
>02_05_0930 - 32801737-32801936,32802038-32802107
Length = 89
Score = 29.9 bits (64), Expect = 2.9
Identities = 13/30 (43%), Positives = 18/30 (60%), Gaps = 2/30 (6%)
Frame = +2
Query: 488 CDMRECDQSCRRIGFPGGV--CVNGRCKCD 571
CD C +C+R + GG+ CV +CKCD
Sbjct: 44 CDSGLCVANCQR-QYRGGIGQCVGNKCKCD 72
>05_07_0345 - 29417029-29417769
Length = 246
Score = 29.5 bits (63), Expect = 3.8
Identities = 12/29 (41%), Positives = 19/29 (65%)
Frame = +2
Query: 389 FGFSGGICVGGQCECGNIHRNADQNENQS 475
F + G+ +GG GN ++N DQN+NQ+
Sbjct: 30 FRVNVGVGIGGGIGIGNQNQNQDQNQNQN 58
>05_03_0244 + 10857139-10857516
Length = 125
Score = 29.5 bits (63), Expect = 3.8
Identities = 10/30 (33%), Positives = 14/30 (46%)
Frame = +2
Query: 473 STLENCDMRECDQSCRRIGFPGGVCVNGRC 562
S+ +C + C +G PG C GRC
Sbjct: 39 SSFYSCSKKSAAAVCLAVGSPGATCCGGRC 68
>03_02_0141 +
5867591-5867736,5867926-5868010,5868096-5868137,
5868255-5868423,5868792-5868844,5869022-5869240,
5869507-5869553,5869732-5869786
Length = 271
Score = 29.1 bits (62), Expect = 5.0
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = -1
Query: 282 HCSPSHAPLGNPSSRQSWSQAIKSQLRN 199
H +PS +P +P+S + W A + LRN
Sbjct: 11 HAAPSSSPSPSPASLRQWRPAAQRNLRN 38
>02_05_0929 - 32798477-32798679,32798833-32798917
Length = 95
Score = 28.7 bits (61), Expect = 6.6
Identities = 12/29 (41%), Positives = 17/29 (58%), Gaps = 2/29 (6%)
Frame = +2
Query: 353 CTTSECDQLCRRFGFSGGI--CVGGQCEC 433
C + EC C R + GG+ C+G QC+C
Sbjct: 56 CDSGECATNCPR-QYKGGVGQCIGTQCKC 83
>01_03_0269 +
14442886-14442978,14443306-14443377,14443551-14444045,
14444134-14444253
Length = 259
Score = 28.7 bits (61), Expect = 6.6
Identities = 14/44 (31%), Positives = 21/44 (47%), Gaps = 7/44 (15%)
Frame = -2
Query: 686 TXXGNPILRHDWIASWGYXNL*EKI-------DLHPDQLYCCWL 576
T GNP + +D WG + E++ +HP + CCWL
Sbjct: 213 THPGNPCIFYDHFFDWGLKDEIERLVSIRNRQGIHPARGRCCWL 256
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,586,471
Number of Sequences: 37544
Number of extensions: 532474
Number of successful extensions: 1451
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1340
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1449
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2530383840
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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