Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP13_F_J10
         (858 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC16.04 |dus3||tRNA dihydrouridine synthase Dus3 |Schizosaccha...    27   2.6  
SPBC1718.06 |msp1|mgm1|mitochondrial GTPase Msp1|Schizosaccharom...    27   4.5  
SPAC9G1.10c |||inositol polyphosphate phosphatase |Schizosacchar...    26   6.0  
SPAPB2B4.04c ||pmc1, pmc1|P-type ATPase, calcium transporting Pm...    26   6.0  

>SPAC16.04 |dus3||tRNA dihydrouridine synthase Dus3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 617

 Score = 27.5 bits (58), Expect = 2.6
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = -1

Query: 549 SECSMCSPLDTGKMPPWILLHSL 481
           SE +MC PL  G  P W L+  L
Sbjct: 268 SEMAMCYPLMQGHQPEWALVRGL 290


>SPBC1718.06 |msp1|mgm1|mitochondrial GTPase
           Msp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 903

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 13/44 (29%), Positives = 23/44 (52%)
 Frame = +3

Query: 300 NQVVGDDALVDDDESVVKSSQDIDTTILFTKPVPSLGDLTFDIQ 431
           + V G+D L  D++  +      D  +LFTK +  + ++  DIQ
Sbjct: 212 DSVDGEDTLTADEKRKLAQESKEDRMMLFTKKMIEIRNILQDIQ 255


>SPAC9G1.10c |||inositol polyphosphate phosphatase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1191

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 13/52 (25%), Positives = 22/52 (42%)
 Frame = +1

Query: 550 TSPRCLITEKLSQNRRPPLPIPSSPMKLLLEDLSDXMCSLITEMPAEMLTRK 705
           T+P  L     S    PP+P P  P  + +E +      +  ++P  +  RK
Sbjct: 254 TAPPVLNIGDRSLETPPPIPSPRPPQPVAVEAIQQSRAVISQQLPLHVSPRK 305


>SPAPB2B4.04c ||pmc1, pmc1|P-type ATPase, calcium transporting Pmc1
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1292

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 7/12 (58%), Positives = 10/12 (83%)
 Frame = -3

Query: 115  GRVGGHSLWLQH 80
            GR+GGH +W+ H
Sbjct: 1268 GRLGGHDIWISH 1279


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,188,544
Number of Sequences: 5004
Number of extensions: 62713
Number of successful extensions: 174
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 170
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 174
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 426466470
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)