Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP13_F_J10
         (858 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024852-1|AAK66027.1|  257|Caenorhabditis elegans Hypothetical ...   138   6e-33
U29614-1|AAM54191.1| 1061|Caenorhabditis elegans Temporarily ass...    33   0.26 
AL033536-3|CAA22142.1| 1564|Caenorhabditis elegans Hypothetical ...    30   1.8  
Z70309-5|CAB54290.2|  402|Caenorhabditis elegans Hypothetical pr...    29   4.2  
Z70309-4|CAA94359.2|  388|Caenorhabditis elegans Hypothetical pr...    29   4.2  
Z82272-6|CAB05222.1| 1431|Caenorhabditis elegans Hypothetical pr...    28   7.4  
U13072-6|AAK31399.1|  327|Caenorhabditis elegans Hypothetical pr...    28   9.8  
U00050-6|AAM22064.1|  208|Caenorhabditis elegans Hypothetical pr...    28   9.8  
U00050-5|AAM22063.1|  291|Caenorhabditis elegans Hypothetical pr...    28   9.8  

>AC024852-1|AAK66027.1|  257|Caenorhabditis elegans Hypothetical
           protein Y71F9AM.6 protein.
          Length = 257

 Score =  138 bits (333), Expect = 6e-33
 Identities = 64/145 (44%), Positives = 90/145 (62%)
 Frame = +3

Query: 330 DDDESVVKSSQDIDTTILFTKPVPSLGDLTFDIQAGYPVEFFVGFINKGSVDYVVESMEA 509
           +DD+  + +S D      F +P  S  ++  +   G PV++ +GF NKG  D+VV+  E 
Sbjct: 37  EDDDLTIGASPDAGLAFHFVQP--SDANVVREFYTGKPVKYLIGFQNKGEKDFVVKYAET 94

Query: 510 SFRYPMDYTYYIQNFTALPYNREVKPKQEATFAYSFIPNEAFAGRPFGXNVQLNYRDASG 689
           SFR+P D++Y++QNFT   YNR V PK+E T  Y F  +E FAGRP G  V ++Y+DA G
Sbjct: 95  SFRFPTDHSYHLQNFTRGEYNRRVAPKEEVTLDYGFYAHETFAGRPVGLVVNVHYQDADG 154

Query: 690 NAYQEAVYNQTLNIVEVSEGLXGET 764
           N +   VYNQT+NI+E   G  GET
Sbjct: 155 NVFVNNVYNQTINIMEDDSGFSGET 179


>U29614-1|AAM54191.1| 1061|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 279, isoform b protein.
          Length = 1061

 Score = 33.1 bits (72), Expect = 0.26
 Identities = 20/42 (47%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
 Frame = +1

Query: 508 HLSGIQWTTH-TTFRTSPRCLITEKLSQNRRPPLPIPSSPMK 630
           HL+GI  TTH T F  SPR +   K SQ   PP P  +S M+
Sbjct: 7   HLTGITGTTHFTIFGASPRSMSLVKNSQ-ETPPFPGMNSTMR 47


>AL033536-3|CAA22142.1| 1564|Caenorhabditis elegans Hypothetical
            protein Y53C10A.9 protein.
          Length = 1564

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 17/54 (31%), Positives = 29/54 (53%), Gaps = 3/54 (5%)
 Frame = +1

Query: 625  MKLLLEDLSDX--MCSLITE-MPAEMLTRKQSTTRHSTLWKYPKVXMERHSXLY 777
            M L+L  L D   +C +++E MP  +L   +S+   S +W+ PK   ++ S  Y
Sbjct: 1471 MTLILNSLEDLESVCVIVSEEMPDAVLKTPESSLTTSIVWELPKSKSDKWSEKY 1524


>Z70309-5|CAB54290.2|  402|Caenorhabditis elegans Hypothetical
           protein R102.5b protein.
          Length = 402

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 21/70 (30%), Positives = 30/70 (42%), Gaps = 1/70 (1%)
 Frame = +1

Query: 523 QWTTHTTFRTSPRCLITEKLSQNRRPPLPIPS-SPMKLLLEDLSDXMCSLITEMPAEMLT 699
           QW+   + R  P  +      Q++R P P+ S +P  L  ED      + I E P    T
Sbjct: 29  QWSIQQSIRIEPISIQMPNTLQSQRAPSPVGSKAPESLKDEDPDRTPEASIVETPLLTET 88

Query: 700 RKQSTTRHST 729
            K+  T  ST
Sbjct: 89  LKEDRTPMST 98


>Z70309-4|CAA94359.2|  388|Caenorhabditis elegans Hypothetical
           protein R102.5a protein.
          Length = 388

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 21/70 (30%), Positives = 30/70 (42%), Gaps = 1/70 (1%)
 Frame = +1

Query: 523 QWTTHTTFRTSPRCLITEKLSQNRRPPLPIPS-SPMKLLLEDLSDXMCSLITEMPAEMLT 699
           QW+   + R  P  +      Q++R P P+ S +P  L  ED      + I E P    T
Sbjct: 29  QWSIQQSIRIEPISIQMPNTLQSQRAPSPVGSKAPESLKDEDPDRTPEASIVETPLLTET 88

Query: 700 RKQSTTRHST 729
            K+  T  ST
Sbjct: 89  LKEDRTPMST 98


>Z82272-6|CAB05222.1| 1431|Caenorhabditis elegans Hypothetical protein
            F55G11.9 protein.
          Length = 1431

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 16/54 (29%), Positives = 27/54 (50%), Gaps = 3/54 (5%)
 Frame = +1

Query: 625  MKLLLEDLSDX--MCSLI-TEMPAEMLTRKQSTTRHSTLWKYPKVXMERHSXLY 777
            M L+L  L D   +C ++  +MP   L   +S+   S +W+ PK   ++ S  Y
Sbjct: 1350 MTLILNKLEDRKSVCQIVKADMPYATLKTPESSLTTSIVWEIPKKKSDKWSVKY 1403


>U13072-6|AAK31399.1|  327|Caenorhabditis elegans Hypothetical
           protein C07D10.1 protein.
          Length = 327

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = +2

Query: 638 WKTFRXKCAA*LQRCQRKCLPGSS 709
           WK F+   AA LQRC+R C   +S
Sbjct: 14  WKVFKSVDAATLQRCRRVCTKWNS 37


>U00050-6|AAM22064.1|  208|Caenorhabditis elegans Hypothetical
           protein F09F7.7b protein.
          Length = 208

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 21/70 (30%), Positives = 30/70 (42%)
 Frame = -2

Query: 659 IXSERSSSKSFIGDEGIGKGGLLFWLNFSVIRQRGEVLNVVCVVHWIPERCLHGFYYIVY 480
           I  E +S +S   D  I   GL    NF    +  ++LN++  V W   +   G     Y
Sbjct: 65  IIDESTSCQSVSTDGSIEIDGLTLIHNFLSESEESKILNMIDTVEWAQSQ--SGRRKQDY 122

Query: 479 GTLVDEAHKK 450
           G  V+  HKK
Sbjct: 123 GPKVNFKHKK 132


>U00050-5|AAM22063.1|  291|Caenorhabditis elegans Hypothetical
           protein F09F7.7a protein.
          Length = 291

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 21/70 (30%), Positives = 30/70 (42%)
 Frame = -2

Query: 659 IXSERSSSKSFIGDEGIGKGGLLFWLNFSVIRQRGEVLNVVCVVHWIPERCLHGFYYIVY 480
           I  E +S +S   D  I   GL    NF    +  ++LN++  V W   +   G     Y
Sbjct: 65  IIDESTSCQSVSTDGSIEIDGLTLIHNFLSESEESKILNMIDTVEWAQSQ--SGRRKQDY 122

Query: 479 GTLVDEAHKK 450
           G  V+  HKK
Sbjct: 123 GPKVNFKHKK 132


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,728,829
Number of Sequences: 27780
Number of extensions: 358716
Number of successful extensions: 1104
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 983
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1104
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2139963672
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)