Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP13_F_J10
         (858 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              23   3.6  
DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex det...    23   4.8  
DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex det...    23   4.8  

>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 23.0 bits (47), Expect = 3.6
 Identities = 10/28 (35%), Positives = 14/28 (50%)
 Frame = +2

Query: 482 RLCSRIHGGIFPVSNGLHILHSELHRVA 565
           R C R H  +   +  ++  H ELHR A
Sbjct: 108 RKCPRRHRPVCASNGKIYANHCELHRAA 135


>DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 22.6 bits (46), Expect = 4.8
 Identities = 17/84 (20%), Positives = 34/84 (40%), Gaps = 2/84 (2%)
 Frame = +3

Query: 495 ESMEASFRYPMDYTYYIQNFTALPYNR-EVKPKQEATFAYSFIPNEAFAG-RPFGXNVQL 668
           E  + S++   +Y  Y +       +R E +  +E     S   N  ++    +  N   
Sbjct: 44  EREQKSYKNEREYRKYRETSKERSQDRTERETSKEPKIISSLSNNYKYSNYNNYNNNYNN 103

Query: 669 NYRDASGNAYQEAVYNQTLNIVEV 740
           NY +   N Y++   N  +NI ++
Sbjct: 104 NYNNNYNNNYKKLYKNYIINIEQI 127


>DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 22.6 bits (46), Expect = 4.8
 Identities = 17/84 (20%), Positives = 34/84 (40%), Gaps = 2/84 (2%)
 Frame = +3

Query: 495 ESMEASFRYPMDYTYYIQNFTALPYNR-EVKPKQEATFAYSFIPNEAFAG-RPFGXNVQL 668
           E  + S++   +Y  Y +       +R E +  +E     S   N  ++    +  N   
Sbjct: 44  EREQKSYKNEREYRKYRETSKERSQDRTERETSKEPKIISSLSNNYKYSNYNNYNNNYNN 103

Query: 669 NYRDASGNAYQEAVYNQTLNIVEV 740
           NY +   N Y++   N  +NI ++
Sbjct: 104 NYNNNYNNNYKKLYKNYIINIEQI 127


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 219,147
Number of Sequences: 438
Number of extensions: 4611
Number of successful extensions: 10
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27673956
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)