Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP13_F_J05
         (882 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024780-6|AAF60569.1|  259|Caenorhabditis elegans Ribosomal pro...   271   4e-73
AL032634-2|CAC35855.1|  276|Caenorhabditis elegans Hypothetical ...    30   1.9  
AL132948-1|CAC51077.1|  735|Caenorhabditis elegans Hypothetical ...    27   2.3  
U97189-1|AAC48164.1|  623|Caenorhabditis elegans Hypothetical pr...    30   2.5  
Z69885-4|CAA93757.1|  208|Caenorhabditis elegans Hypothetical pr...    29   5.8  
AC024792-1|AAK84610.1|  938|Caenorhabditis elegans Importin beta...    28   7.7  

>AC024780-6|AAF60569.1|  259|Caenorhabditis elegans Ribosomal
           protein, small subunitprotein 4 protein.
          Length = 259

 Score =  271 bits (665), Expect = 4e-73
 Identities = 126/191 (65%), Positives = 148/191 (77%)
 Frame = +1

Query: 70  RGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVL 249
           RGPKKHLKRL AP  WMLDKLGGV+A RP+ GPHKLRE LPL +FLRNRLKYAL   E  
Sbjct: 2   RGPKKHLKRLAAPSHWMLDKLGGVFAVRPNPGPHKLRESLPLSLFLRNRLKYALNYTEAK 61

Query: 250 KIVKQRLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYK 429
           KI+ QR+++VDGKVRT   +P GFMDVV+IE+TNE FR++YD KGR+ +HRI   EA +K
Sbjct: 62  KILTQRVVRVDGKVRTCHKFPTGFMDVVAIERTNEYFRMLYDTKGRYVVHRIQAAEADFK 121

Query: 430 LCKVKRVATGPKNVPYLVTHDGRTIRYPDPLIKVNDSIQLDIATTKIMDFIKFESGNLCM 609
           LCKVK V T  K VP L T DGRTIRYPDP +KVND+I  +I+T KI D +KFE GNL  
Sbjct: 122 LCKVKSVRTVNKGVPVLTTTDGRTIRYPDPHVKVNDTIVFNISTQKITDSVKFEPGNLAY 181

Query: 610 ITGGRNLGACG 642
           +TGGRN+G  G
Sbjct: 182 VTGGRNVGRVG 192



 Score = 54.4 bits (125), Expect = 1e-07
 Identities = 24/36 (66%), Positives = 30/36 (83%)
 Frame = +3

Query: 729 LNNVFIIGKGTXAYISLPRGKGIRLTIAEXRDKRIA 836
           ++NVF+IGKG  A +SLP G GIRL+IAE RDKR+A
Sbjct: 221 ISNVFVIGKGNKALVSLPTGAGIRLSIAEERDKRMA 256



 Score = 52.0 bits (119), Expect = 5e-07
 Identities = 22/33 (66%), Positives = 27/33 (81%)
 Frame = +2

Query: 632 GRVGTIVXRERHPGSFDIVHIKDSTGHTFATKV 730
           GRVG I  RER PG+ DI+HIKDS GH+FAT++
Sbjct: 189 GRVGIIGHRERLPGASDIIHIKDSAGHSFATRI 221


>AL032634-2|CAC35855.1|  276|Caenorhabditis elegans Hypothetical
           protein Y39G8C.2 protein.
          Length = 276

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 17/46 (36%), Positives = 27/46 (58%), Gaps = 2/46 (4%)
 Frame = +2

Query: 623 VTWGRVGTIVXRERHPGSFDIVH-IKDS-TGHTFATKVEQRVHNRQ 754
           ++ G+   +V R    G F  V+ +KD+ T  TFA KVEQ++  R+
Sbjct: 17  ISSGKANYVVSRLLGEGGFGAVYLVKDTKTNKTFAMKVEQKMEKRK 62


>AL132948-1|CAC51077.1|  735|Caenorhabditis elegans Hypothetical
           protein Y39B6A.1 protein.
          Length = 735

 Score = 27.5 bits (58), Expect(2) = 2.3
 Identities = 13/33 (39%), Positives = 15/33 (45%)
 Frame = +1

Query: 616 GGRNLGACGHHRVPRETSRLLRHCAHQGLHGTH 714
           G  + G+ G H     T   L H  H G HGTH
Sbjct: 644 GDHHHGSHGVHHGHHGTHHSLAHHGHHGGHGTH 676



 Score = 21.0 bits (42), Expect(2) = 2.3
 Identities = 7/12 (58%), Positives = 7/12 (58%)
 Frame = +1

Query: 688 AHQGLHGTHLRH 723
           AH G HG H  H
Sbjct: 684 AHHGHHGAHHEH 695


>U97189-1|AAC48164.1|  623|Caenorhabditis elegans Hypothetical
           protein C48B6.4 protein.
          Length = 623

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 18/50 (36%), Positives = 27/50 (54%), Gaps = 6/50 (12%)
 Frame = +1

Query: 382 GRFTIHRITPEEAKYKLCKVKRVATGPKNVP-----YLVTHDGRTIR-YP 513
           G+  + R+T  E  Y+ CK+++ A   K VP     Y+V H  R I+ YP
Sbjct: 302 GQIIVRRLTDPEYPYRHCKIQKFAVRCKLVPENYGWYVVWHCQRDIQEYP 351


>Z69885-4|CAA93757.1|  208|Caenorhabditis elegans Hypothetical
           protein T04C10.4 protein.
          Length = 208

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = +3

Query: 498 HHPLPRPTYQSQRFHPVRHRNYEDYGLH 581
           HH    PTY    F+P  H++Y+ + L+
Sbjct: 32  HHHHQSPTYPQSYFNPYSHQSYQQHHLN 59


>AC024792-1|AAK84610.1|  938|Caenorhabditis elegans Importin beta
            family protein 5 protein.
          Length = 938

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 16/55 (29%), Positives = 23/55 (41%)
 Frame = -2

Query: 539  ESLTLISGSG*RMVRPSCVTKYGTFLGPVATRLTLHNLYLASSGVIRWIVNLPLT 375
            E  ++ +  G   V P C   Y     PVA  +  H  Y A + ++R   N P T
Sbjct: 868  EQASMYNAEG-EFVNPFCRLSYAPKQPPVAANIANHKAYFAQAVLVRGPGNCPET 921


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,981,566
Number of Sequences: 27780
Number of extensions: 448122
Number of successful extensions: 1259
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1154
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1253
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2223883816
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)