Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP13_F_J03
         (878 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBPB2B2.13 |||galactokinase Gal1 |Schizosaccharomyces pombe|chr...    44   4e-05
SPAC13G6.11c |erg12||mevalonate kinase Erg12 |Schizosaccharomyce...    31   0.29 
SPBC691.05c ||SPBP22H7.01c|membrane transporter |Schizosaccharom...    31   0.29 
SPBC83.07 |jmj3||Lid2 complex subunit Jmj3|Schizosaccharomyces p...    27   3.5  
SPAC589.12 ||SPAC688.01|glycosylceramide biosynthesis protein |S...    27   3.5  
SPAC23H3.11c |||glucosidase |Schizosaccharomyces pombe|chr 1|||M...    27   4.7  
SPAC4A8.07c |||sphingoid long chain base |Schizosaccharomyces po...    27   4.7  
SPBC1D7.03 |mug80||cyclin Clg1 |Schizosaccharomyces pombe|chr 2|...    27   4.7  
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    26   6.1  
SPCC736.14 |dis1||microtubule-associated protein Dis1 |Schizosac...    26   6.1  
SPBC16A3.07c |nrm1||negative regulator of MBF|Schizosaccharomyce...    26   8.1  
SPAC3F10.16c |||GTP binding protein, HSR1-related|Schizosaccharo...    26   8.1  

>SPBPB2B2.13 |||galactokinase Gal1 |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 519

 Score = 43.6 bits (98), Expect = 4e-05
 Identities = 22/58 (37%), Positives = 32/58 (55%)
 Frame = +1

Query: 145 PKGEGVLLRQATDRFIVAYGRRPEVAAAAPGRVNLIGEHVDYCEGFVLPVAIPFLTVV 318
           PK       +  + F   Y  +P+  + +PGRVN+IGEH+DY    VLP+AI    +V
Sbjct: 16  PKENKARYAKLLNSFEQKYHCKPDFFSRSPGRVNIIGEHIDYNYFSVLPMAIDVDVIV 73



 Score = 26.2 bits (55), Expect = 6.1
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = +2

Query: 485 VNGFDIVVVSDVPMGSGVSSSAAIEVA 565
           + G  ++   +VP G G+SSSAA  VA
Sbjct: 145 LKGLKLIFDGNVPTGGGLSSSAAFCVA 171


>SPAC13G6.11c |erg12||mevalonate kinase Erg12 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 404

 Score = 30.7 bits (66), Expect = 0.29
 Identities = 14/30 (46%), Positives = 19/30 (63%)
 Frame = +2

Query: 491 GFDIVVVSDVPMGSGVSSSAAIEVAVFTLL 580
           G  + + S VP+G+G+ SSA I V V T L
Sbjct: 123 GCTLTISSQVPLGAGLGSSATISVVVATSL 152


>SPBC691.05c ||SPBP22H7.01c|membrane transporter
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 668

 Score = 30.7 bits (66), Expect = 0.29
 Identities = 21/66 (31%), Positives = 32/66 (48%)
 Frame = +2

Query: 284 FYQWQYRSLPSSWDRTTTQMSVA*SQCWRPVRSWRPVSLLPSRAELRPGQPEWANYIKGV 463
           F++ Q   L + W     Q S+A S      +S+R  SLL +    RP  P+W   ++  
Sbjct: 227 FWRVQEHKLTNHWSTVNCQ-SLAKSMTEFKPQSYRVDSLLGTA---RPYYPQWEIIVRST 282

Query: 464 IANFPI 481
           IAN P+
Sbjct: 283 IANVPL 288


>SPBC83.07 |jmj3||Lid2 complex subunit Jmj3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 752

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 15/41 (36%), Positives = 23/41 (56%)
 Frame = -1

Query: 404 VAGKLASNSSPDANTVITRQTSVLLYDPTTTVRNGIATGRT 282
           +AGKLA +     +  +  Q   +L+ P+T V+NGI T  T
Sbjct: 247 LAGKLAQDEHWRCSDFLLHQN--ILFPPSTLVQNGIVTYST 285


>SPAC589.12 ||SPAC688.01|glycosylceramide biosynthesis protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 971

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = -1

Query: 413 PLMVAGKLASNSSPDANTVITRQTSVLLYDP 321
           PL+  G + SN   +  T++TR T +L  +P
Sbjct: 853 PLVFLGYVVSNVGQEPQTILTRDTGMLDIEP 883


>SPAC23H3.11c |||glucosidase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 629

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 15/36 (41%), Positives = 16/36 (44%)
 Frame = -1

Query: 245 LTRPGAAAATSGRLPYATMNLSVACRNNTPSPFGIA 138
           L RPG  A T G  PYA     V    N  S  GI+
Sbjct: 346 LARPGYMATTDGVWPYAYSQCDVGITPNQSSYDGIS 381


>SPAC4A8.07c |||sphingoid long chain base |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 458

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 16/34 (47%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
 Frame = +1

Query: 241 VNLIGEHVDYCEGFVLPVA-IPFLTVVVGSYNNT 339
           +N +GE  DY E F LPV  IP  +    SYN T
Sbjct: 179 INGLGERDDYLEAFKLPVCMIPGGSGNAFSYNAT 212


>SPBC1D7.03 |mug80||cyclin Clg1 |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 461

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 12/18 (66%), Positives = 16/18 (88%)
 Frame = -3

Query: 594 PVSPSSSVNTATSMAALL 541
           PVS S+S N+A+S+AALL
Sbjct: 27  PVSSSNSANSASSVAALL 44


>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 800

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 17/51 (33%), Positives = 27/51 (52%)
 Frame = -3

Query: 603 TILPVSPSSSVNTATSMAALLETPEPIGTSDTTTISKPFTFIGKLAITPLI 451
           T +P+ P+S+ +T T+ + L  T     TS TT+ S P T      +TP +
Sbjct: 259 TSIPIPPTSTSSTDTNSSPLPTT----STSCTTSTSIPPTGNSTTPVTPTV 305


>SPCC736.14 |dis1||microtubule-associated protein Dis1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 882

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 25/74 (33%), Positives = 35/74 (47%)
 Frame = -3

Query: 705 AHSNQCTDPMMPHGIPRGSRALPSDTXWLFPLKLTILPVSPSSSVNTATSMAALLETPEP 526
           AH NQ + P +P        A P  T    P+KL + P +PS   ++  S A+L  T E 
Sbjct: 536 AHPNQPSRPRLPRV------ASPLKTS---PVKLAVTPQAPSPLPSSNPSQASL--TEES 584

Query: 525 IGTSDTTTISKPFT 484
           + T  + T  KP T
Sbjct: 585 LSTRSSPT--KPST 596


>SPBC16A3.07c |nrm1||negative regulator of MBF|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 342

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = -3

Query: 543 LETPEPIGTSDTTTISKPFT 484
           L TP PIG+ D T +  P+T
Sbjct: 217 LTTPRPIGSDDLTHMYDPYT 236


>SPAC3F10.16c |||GTP binding protein,
           HSR1-related|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 616

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 13/48 (27%), Positives = 24/48 (50%)
 Frame = +3

Query: 591 REGWLVLVEKAXLCQKAEHDFPWGCRAASWDQYIGYYGPKRXHALLID 734
           R+ W V+     + Q  +   P   R+A  +QY+   GP + + LL++
Sbjct: 162 RQLWRVIERSDVVVQIVDARNPLFFRSAHLEQYVKEVGPSKKNFLLVN 209


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,659,221
Number of Sequences: 5004
Number of extensions: 78657
Number of successful extensions: 277
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 253
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 277
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 440481800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)