Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP13_F_J03
(878 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_06_0566 + 34760991-34761186,34761283-34761455,34762370-347624... 53 3e-07
06_03_1297 + 29110432-29110542,29110613-29110804,29110893-291109... 46 4e-05
02_01_0326 - 2230617-2230735,2231430-2231493,2231646-2231849,223... 43 4e-04
10_05_0069 + 8782535-8782920,8783016-8783281,8783588-8783869,878... 32 0.70
06_03_1303 + 29180837-29181205,29181289-29181306,29181337-291816... 30 2.8
08_01_0903 - 8897977-8899016,8899128-8899300,8901553-8901666,890... 29 3.7
09_04_0569 + 18600750-18602117 28 8.6
06_01_0586 - 4203024-4203425,4203527-4203595,4203681-4203746,420... 28 8.6
03_05_0845 - 28155065-28155374,28156201-28156342,28156375-281565... 28 8.6
02_05_1338 + 35790726-35791862 28 8.6
01_07_0251 + 42289617-42291241,42291424-42292156 28 8.6
>03_06_0566 +
34760991-34761186,34761283-34761455,34762370-34762416,
34762546-34762640,34762734-34762816,34763331-34763399,
34763874-34764059,34764374-34764508,34764774-34764908,
34765148-34765218,34765393-34765470,34765626-34765767,
34765940-34766050
Length = 506
Score = 52.8 bits (121), Expect = 3e-07
Identities = 26/46 (56%), Positives = 33/46 (71%), Gaps = 1/46 (2%)
Frame = +1
Query: 166 LRQATDRFIVAYGRRPEVAAAAPGRVNLIGEHVDYCEGF-VLPVAI 300
L + D+F Y RP + A +PGRVNLIGEH+DY EG+ VLP+AI
Sbjct: 43 LARLADKFHAVYAARPALFARSPGRVNLIGEHIDY-EGYSVLPMAI 87
Score = 31.9 bits (69), Expect = 0.70
Identities = 18/45 (40%), Positives = 25/45 (55%)
Frame = +2
Query: 455 KGVIANFPIKVNGFDIVVVSDVPMGSGVSSSAAIEVAVFTLLEGL 589
KG+ P+ G D+VV VP GSG+SSSAA + + G+
Sbjct: 150 KGIDMGGPV---GLDVVVDGTVPTGSGLSSSAAFVCSATIAIMGV 191
>06_03_1297 +
29110432-29110542,29110613-29110804,29110893-29110976,
29111115-29111191,29111410-29111476,29111640-29111697,
29111823-29111890,29111981-29112043,29112549-29112651,
29112685-29112845,29112934-29113053,29113300-29113356,
29113646-29113809,29113896-29114055,29114720-29114803,
29115074-29115196,29115368-29115498,29115577-29115658,
29115876-29115963,29116143-29116186,29116264-29116387,
29116450-29116537,29116649-29116849,29116894-29117104,
29117383-29117454,29117587-29117790,29117959-29118087
Length = 1021
Score = 46.0 bits (104), Expect = 4e-05
Identities = 32/104 (30%), Positives = 50/104 (48%), Gaps = 6/104 (5%)
Frame = +2
Query: 386 RPVSLLPSRAEL-RPGQPEWANYIKGVI----ANFPIK-VNGFDIVVVSDVPMGSGVSSS 547
+P+S +R R +WA Y+ G I +K + I+V SDVP G GVSSS
Sbjct: 590 KPISYEKAREFFCRNPSQKWAAYVAGTILVLMTELDVKFTDSMSILVSSDVPEGKGVSSS 649
Query: 548 AAIEVAVFTLLEGLTGRMVSFSGKSQXVSEGRARLPLGMPCGIM 679
A++EVA + G ++ + + + +G PCG+M
Sbjct: 650 ASVEVATMAAIAAAYGLNIAPRDLALLCQKVENHV-VGAPCGVM 692
>02_01_0326 -
2230617-2230735,2231430-2231493,2231646-2231849,
2231945-2232016,2232293-2232458,2232543-2232758,
2232873-2232949,2233056-2233151,2233237-2233280,
2233435-2233522,2233805-2233886,2233961-2234091,
2234264-2234350,2234804-2234887,2234985-2235144,
2235251-2235414,2235757-2235762,2235823-2235879,
2236159-2236278,2236387-2236496,2236587-2236689,
2236789-2236842,2237106-2237168,2237258-2237325,
2237412-2237469,2237684-2237750,2238233-2238309,
2238433-2238516,2238652-2238828,2239010-2239144
Length = 1010
Score = 42.7 bits (96), Expect = 4e-04
Identities = 29/90 (32%), Positives = 45/90 (50%), Gaps = 5/90 (5%)
Frame = +2
Query: 425 PGQPEWANYIKGVIANFPIKV-----NGFDIVVVSDVPMGSGVSSSAAIEVAVFTLLEGL 589
P Q +WA Y+ G I ++ + I+V S VP G GVSSSA++EVA + +
Sbjct: 599 PSQ-KWAAYVAGTILVLMTELGVVFTDSMSILVSSSVPEGKGVSSSASVEVASMSAIAAA 657
Query: 590 TGRMVSFSGKSQXVSEGRARLPLGMPCGIM 679
G + + + R+ +G PCG+M
Sbjct: 658 YGLNIPPRDLAILCQKVENRI-VGAPCGVM 686
>10_05_0069 +
8782535-8782920,8783016-8783281,8783588-8783869,
8784559-8784632,8787230-8787461,8788067-8788077
Length = 416
Score = 31.9 bits (69), Expect = 0.70
Identities = 17/41 (41%), Positives = 25/41 (60%)
Frame = +2
Query: 500 IVVVSDVPMGSGVSSSAAIEVAVFTLLEGLTGRMVSFSGKS 622
+ V SD+PMGSG+ SSAA V++ +L G + + G S
Sbjct: 135 VTVSSDLPMGSGLGSSAAFCVSMSGVLLTAAGVVTAVGGIS 175
>06_03_1303 +
29180837-29181205,29181289-29181306,29181337-29181622,
29185008-29186284,29186499-29187005
Length = 818
Score = 29.9 bits (64), Expect = 2.8
Identities = 15/37 (40%), Positives = 21/37 (56%)
Frame = -3
Query: 588 SPSSSVNTATSMAALLETPEPIGTSDTTTISKPFTFI 478
SPS S + + S +A TP GTS TTT S ++ +
Sbjct: 530 SPSPSPSPSPSPSASATTPTQTGTSTTTTTSSMYSIL 566
>08_01_0903 -
8897977-8899016,8899128-8899300,8901553-8901666,
8901743-8901836,8901925-8902103,8902165-8902496,
8913058-8913306
Length = 726
Score = 29.5 bits (63), Expect = 3.7
Identities = 23/79 (29%), Positives = 36/79 (45%)
Frame = +2
Query: 401 LPSRAELRPGQPEWANYIKGVIANFPIKVNGFDIVVVSDVPMGSGVSSSAAIEVAVFTLL 580
L SR + E + +GVI IK + I S P GSG +I A+ +
Sbjct: 526 LSSRENMVTSDAELGSMQRGVIRRLTIKNDFSSIPKDSTQPSGSGTMDVQSINRALASAQ 585
Query: 581 EGLTGRMVSFSGKSQXVSE 637
+G R ++F G S+ +S+
Sbjct: 586 KGKI-RSLAFLGNSRLLSD 603
>09_04_0569 + 18600750-18602117
Length = 455
Score = 28.3 bits (60), Expect = 8.6
Identities = 12/31 (38%), Positives = 19/31 (61%)
Frame = -3
Query: 618 FPLKLTILPVSPSSSVNTATSMAALLETPEP 526
F L + PVSPS+S +T++S + +P P
Sbjct: 172 FDLSRLLPPVSPSASTSTSSSSCSATSSPPP 202
>06_01_0586 -
4203024-4203425,4203527-4203595,4203681-4203746,
4204006-4204071,4204642-4204719,4204811-4205233
Length = 367
Score = 28.3 bits (60), Expect = 8.6
Identities = 11/25 (44%), Positives = 20/25 (80%)
Frame = -3
Query: 606 LTILPVSPSSSVNTATSMAALLETP 532
L ++P+S +S++++ATS A+LL P
Sbjct: 300 LCLMPISLASAISSATSSASLLSRP 324
>03_05_0845 -
28155065-28155374,28156201-28156342,28156375-28156505,
28156591-28156784,28156859-28156969,28157234-28157399,
28157501-28157668,28157766-28158787
Length = 747
Score = 28.3 bits (60), Expect = 8.6
Identities = 17/50 (34%), Positives = 23/50 (46%)
Frame = -1
Query: 335 LLYDPTTTVRNGIATGRTKPSQ*STCSPMRLTRPGAAAATSGRLPYATMN 186
+LY TTV G+ RT+ S S P AAA G+ P T++
Sbjct: 275 MLYREATTVGGGVPYVRTQRSTRRVASGGTCWAPSAAATPEGKRPGQTIS 324
>02_05_1338 + 35790726-35791862
Length = 378
Score = 28.3 bits (60), Expect = 8.6
Identities = 13/42 (30%), Positives = 23/42 (54%)
Frame = +2
Query: 479 IKVNGFDIVVVSDVPMGSGVSSSAAIEVAVFTLLEGLTGRMV 604
+K + I + +P+GSG+ SSAA A ++ L G ++
Sbjct: 137 VKSHAVSIHLTKGLPLGSGLGSSAASAAAAAKAVDALFGSLL 178
>01_07_0251 + 42289617-42291241,42291424-42292156
Length = 785
Score = 28.3 bits (60), Expect = 8.6
Identities = 16/46 (34%), Positives = 24/46 (52%)
Frame = -3
Query: 255 SDEVDASRRRCSDFRSSAVCDYESVSGLSQQHPLAFRYRFAIHYFN 118
S +VDA+ RR + S V + +V QH A R A+H+F+
Sbjct: 468 SGDVDAATRRFQEMESHDVVSWSAVISCHAQHGCA---RDALHFFD 510
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,768,118
Number of Sequences: 37544
Number of extensions: 599145
Number of successful extensions: 1592
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1526
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1591
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2479731924
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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