Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP13_F_J03
         (878 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF003739-5|AAK84629.2|  422|Caenorhabditis elegans Temporarily a...    60   2e-09
AF251308-1|AAF82360.1| 1413|Caenorhabditis elegans guanine nucle...    31   1.4  
AC006692-9|AAF39972.5| 1493|Caenorhabditis elegans Drosophila so...    31   1.4  
AF078792-2|AAC26946.1|  512|Caenorhabditis elegans Hypothetical ...    29   3.3  
Z78018-4|CAB01448.1|  522|Caenorhabditis elegans Hypothetical pr...    29   4.4  
AC025716-10|AAK39607.1|  474|Caenorhabditis elegans Hypothetical...    29   5.8  
Z70309-3|CAA94357.2|  358|Caenorhabditis elegans Hypothetical pr...    28   7.7  

>AF003739-5|AAK84629.2|  422|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 96 protein.
          Length = 422

 Score = 60.5 bits (140), Expect = 2e-09
 Identities = 30/81 (37%), Positives = 43/81 (53%)
 Frame = +1

Query: 172 QATDRFIVAYGRRPEVAAAAPGRVNLIGEHVDYCEGFVLPVAIPFLTVVVGSYNNTDVCR 351
           Q  ++F+  YG  PEV    PGRVNLIGEH+DY +  V P+AI   T ++ + N+T+   
Sbjct: 6   QLAEQFVKLYGIEPEVRVTCPGRVNLIGEHIDYHDYGVFPMAIDAATTILAAKNDTNSIV 65

Query: 352 VITVLASGEELEASFPATIKG 414
                +  E   +  P   KG
Sbjct: 66  FSNFDSKYESWSSPIPCPWKG 86


>AF251308-1|AAF82360.1| 1413|Caenorhabditis elegans guanine nucleotide
            exchange factorfor RAS protein.
          Length = 1413

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 20/51 (39%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
 Frame = -3

Query: 672  PHGIPRGSRALPSDTXWLFPLKLTILPVSPSSS--VNTATSMAALLETPEP 526
            P  +PR SRA  S++  L P     +P +P SS  ++TATS   L  T  P
Sbjct: 1272 PPLLPRSSRANQSNSVSLPPTTQAPMPPAPKSSGMMSTATSPTTLTTTTTP 1322


>AC006692-9|AAF39972.5| 1493|Caenorhabditis elegans Drosophila sos
            homolog protein 1 protein.
          Length = 1493

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 20/51 (39%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
 Frame = -3

Query: 672  PHGIPRGSRALPSDTXWLFPLKLTILPVSPSSS--VNTATSMAALLETPEP 526
            P  +PR SRA  S++  L P     +P +P SS  ++TATS   L  T  P
Sbjct: 1272 PPLLPRSSRANQSNSVSLPPTTQAPMPPAPKSSGMMSTATSPTTLTTTTTP 1322


>AF078792-2|AAC26946.1|  512|Caenorhabditis elegans Hypothetical
           protein Y40D12A.2 protein.
          Length = 512

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 17/49 (34%), Positives = 27/49 (55%), Gaps = 4/49 (8%)
 Frame = -3

Query: 198 CDYESVS-GLSQQHPLAFRYRFAIHY--FNTKYLYFFCYHNP-VEYRAH 64
           CDY ++S G      L  +  ++I+Y  ++  +LYF CY NP + Y  H
Sbjct: 236 CDYYTISQGNDTCGDLVNQLSYSIYYTGYDPYFLYFACYLNPNLPYPPH 284


>Z78018-4|CAB01448.1|  522|Caenorhabditis elegans Hypothetical
           protein W07G4.4 protein.
          Length = 522

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 17/45 (37%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
 Frame = +2

Query: 422 RPGQPEWANYIKGVIANFPIKVNGFD--IVVVSDVPMGSGVSSSA 550
           R   P  A YI+G  AN  IKV   D   V++ D P+ + V+ +A
Sbjct: 197 RMAPPRVAEYIQGAFANGNIKVTVVDDQSVILKDFPLMAAVNRAA 241


>AC025716-10|AAK39607.1|  474|Caenorhabditis elegans Hypothetical
           protein Y39G10AR.7 protein.
          Length = 474

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 27/97 (27%), Positives = 40/97 (41%), Gaps = 4/97 (4%)
 Frame = -3

Query: 768 SAPGFGFPKTXSQ*VMRGSFLAHSNQCTDPMMPHGIPRGSRALPSDTXWLFPL--KLTIL 595
           S   F FP + +Q  +     AH  + +    P G P   R  P D   +  L  KL I 
Sbjct: 96  SESAFPFPISPTQIDLPFGHTAHDRKPSCLPTPRGSPNSPRLTPEDEMTVKRLFDKLEI- 154

Query: 594 PVSP--SSSVNTATSMAALLETPEPIGTSDTTTISKP 490
           P +P  SS+ ++  S   LLE    +  +    +S P
Sbjct: 155 PTTPATSSASSSYVSHKTLLELNSKVSKTSAIDVSVP 191


>Z70309-3|CAA94357.2|  358|Caenorhabditis elegans Hypothetical
           protein R102.3 protein.
          Length = 358

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = +1

Query: 301 PFLTVVVGSYNNTDVCRVITVLASGEELEASFPA 402
           PF+TV VG ++N D CR    +   + ++ + PA
Sbjct: 267 PFVTVNVGYHSNIDQCRRQKTIVIEQTVDGTVPA 300


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,689,159
Number of Sequences: 27780
Number of extensions: 465505
Number of successful extensions: 1403
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1319
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1402
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2213393798
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)