Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP13_F_J01
         (825 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    29   0.61 
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    27   2.4  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    27   2.4  
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    26   5.6  

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 29.5 bits (63), Expect = 0.61
 Identities = 14/48 (29%), Positives = 14/48 (29%)
 Frame = +2

Query: 608 PPPPPXXXXPXXXPPXXXXXXXPPXXXXXXPPXPXXXXXPXXXPPXXP 751
           PPPPP    P   P         P      PP P         PP  P
Sbjct: 733 PPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPP 780



 Score = 29.1 bits (62), Expect = 0.80
 Identities = 16/54 (29%), Positives = 16/54 (29%)
 Frame = +1

Query: 634 PPXXPPXXXXXXXXPXXXXXXPPPPXXXXXPXPXXPXXPXPXXXXPXXXXXPPP 795
           PP  PP        P      PP P     P P  P  P      P     PPP
Sbjct: 732 PPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPP--PGVAGAGPPPPPPPPP 783



 Score = 27.9 bits (59), Expect = 1.8
 Identities = 14/52 (26%), Positives = 14/52 (26%)
 Frame = +2

Query: 608 PPPPPXXXXPXXXPPXXXXXXXPPXXXXXXPPXPXXXXXPXXXPPXXPXXXP 763
           PPPPP         P       P       PP P         PP  P   P
Sbjct: 732 PPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPP 783



 Score = 25.4 bits (53), Expect = 9.9
 Identities = 11/34 (32%), Positives = 11/34 (32%)
 Frame = +2

Query: 602 PXPPPPPXXXXPXXXPPXXXXXXXPPXXXXXXPP 703
           P PPP P    P   PP        P      PP
Sbjct: 750 PVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPP 783


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 27.5 bits (58), Expect = 2.4
 Identities = 16/54 (29%), Positives = 16/54 (29%)
 Frame = +1

Query: 634  PPXXPPXXXXXXXXPXXXXXXPPPPXXXXXPXPXXPXXPXPXXXXPXXXXXPPP 795
            P   PP        P      PPPP     P P  P  P      P     PPP
Sbjct: 1686 PVSTPPVRPQSAAPPQMSAPTPPPPPMSVPPPPSAPPMPAGPPSAP-----PPP 1734



 Score = 25.8 bits (54), Expect = 7.5
 Identities = 15/52 (28%), Positives = 15/52 (28%)
 Frame = +1

Query: 601  PPXXPXPXXXXPPXXPPXXXXXXXXPXXXXXXPPPPXXXXXPXPXXPXXPXP 756
            PP    P    PP   P        P      PPPP     P    P  P P
Sbjct: 1699 PPQMSAPTPPPPPMSVPPPPSAPPMPAGPPSAPPPP----LPASSAPSVPNP 1746


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 27.5 bits (58), Expect = 2.4
 Identities = 16/57 (28%), Positives = 16/57 (28%), Gaps = 1/57 (1%)
 Frame = +1

Query: 589  PXXXPPXXPXPXXXXPPXXPPXXXXXXXXP-XXXXXXPPPPXXXXXPXPXXPXXPXP 756
            P    P  P P    PP  PP        P       PPP      P P     P P
Sbjct: 1174 PSSGIPPVPKPAAGVPPVPPPSEAPPVPKPSVGVPPVPPPSTAPPVPTPSAGLPPVP 1230



 Score = 26.6 bits (56), Expect = 4.3
 Identities = 17/68 (25%), Positives = 17/68 (25%)
 Frame = +1

Query: 589  PXXXPPXXPXPXXXXPPXXPPXXXXXXXXPXXXXXXPPPPXXXXXPXPXXPXXPXPXXXX 768
            P    P  P P    PP  PP        P       P P     P P  P    P    
Sbjct: 1193 PPSEAPPVPKPSVGVPPVPPPSTAPPVPTPSAGLPPVPVPTAKAPPVP-APSSEAPSVST 1251

Query: 769  PXXXXXPP 792
            P      P
Sbjct: 1252 PRSSVPSP 1259



 Score = 25.8 bits (54), Expect = 7.5
 Identities = 17/69 (24%), Positives = 17/69 (24%)
 Frame = +1

Query: 589  PXXXPPXXPXPXXXXPPXXPPXXXXXXXXPXXXXXXPPPPXXXXXPXPXXPXXPXPXXXX 768
            P    P  P P    PP   P        P       P P     P P  P    P    
Sbjct: 1164 PSVAAPPVPAPSSGIPPVPKPAAGVPPVPPPSEAPPVPKPSVGVPPVP--PPSTAPPVPT 1221

Query: 769  PXXXXXPPP 795
            P     P P
Sbjct: 1222 PSAGLPPVP 1230


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 26.2 bits (55), Expect = 5.6
 Identities = 9/17 (52%), Positives = 9/17 (52%)
 Frame = +2

Query: 602 PXPPPPPXXXXPXXXPP 652
           P PPPPP    P   PP
Sbjct: 9   PPPPPPPPGFEPPSQPP 25



 Score = 26.2 bits (55), Expect = 5.6
 Identities = 9/17 (52%), Positives = 9/17 (52%)
 Frame = +2

Query: 602 PXPPPPPXXXXPXXXPP 652
           P PPPPP    P   PP
Sbjct: 10  PPPPPPPGFEPPSQPPP 26


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,807,638
Number of Sequences: 5004
Number of extensions: 33822
Number of successful extensions: 144
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 77
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 121
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 404442380
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)