Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP13_F_I23
         (931 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC087079-6|AAK27864.1|  111|Caenorhabditis elegans Ribosomal pro...   101   6e-22
U89307-1|AAB48625.1|  111|Caenorhabditis elegans ribosomal prote...    98   7e-21
Z81030-5|CAB02709.1|  324|Caenorhabditis elegans Hypothetical pr...    29   3.6  
AF036704-5|AAB88558.2|  360|Caenorhabditis elegans Hypothetical ...    29   4.7  

>AC087079-6|AAK27864.1|  111|Caenorhabditis elegans Ribosomal
           protein, acidic protein 1 protein.
          Length = 111

 Score =  101 bits (243), Expect = 6e-22
 Identities = 45/63 (71%), Positives = 57/63 (90%)
 Frame = +3

Query: 126 MVSKAELACVYSALILVDDDVAVTGEKISTILKAAAVDVEPYWPGLFAKALEGINVRDLI 305
           M S  ELACVY+ALIL DD+VA+TGEKI+T+LKAA V+ EPYWPGLFAKALEG++V++LI
Sbjct: 1   MASNQELACVYAALILQDDEVAITGEKIATLLKAANVEFEPYWPGLFAKALEGVDVKNLI 60

Query: 306 TNI 314
           T++
Sbjct: 61  TSV 63


>U89307-1|AAB48625.1|  111|Caenorhabditis elegans ribosomal protein
           P1 homolog protein.
          Length = 111

 Score = 98.3 bits (234), Expect = 7e-21
 Identities = 44/63 (69%), Positives = 56/63 (88%)
 Frame = +3

Query: 126 MVSKAELACVYSALILVDDDVAVTGEKISTILKAAAVDVEPYWPGLFAKALEGINVRDLI 305
           M S  ELACVY+ALIL DD+VA+TGEKI+T+LKAA V+ EP WPGLFAKALEG++V++LI
Sbjct: 1   MASNQELACVYAALILQDDEVAITGEKIATLLKAANVEFEPNWPGLFAKALEGVDVKNLI 60

Query: 306 TNI 314
           T++
Sbjct: 61  TSV 63


>Z81030-5|CAB02709.1|  324|Caenorhabditis elegans Hypothetical
           protein C01G10.7 protein.
          Length = 324

 Score = 29.5 bits (63), Expect = 3.6
 Identities = 15/46 (32%), Positives = 26/46 (56%)
 Frame = +3

Query: 114 SKLKMVSKAELACVYSALILVDDDVAVTGEKISTILKAAAVDVEPY 251
           S  KM+ K  +    S ++ ++D VA+T +  + +  AAA+D  PY
Sbjct: 34  SNQKMLDKVPMMQADSVVLELEDGVALTAKADARVRAAAALDKLPY 79


>AF036704-5|AAB88558.2|  360|Caenorhabditis elegans Hypothetical
           protein ZK185.1 protein.
          Length = 360

 Score = 29.1 bits (62), Expect = 4.7
 Identities = 13/39 (33%), Positives = 24/39 (61%)
 Frame = -1

Query: 148 ANSAFDTIFSFERASCRRP*LKREQARLSSDNKEQILRI 32
           A++++  IFSF +    R  +KRE AR S + + ++L +
Sbjct: 190 ASTSYTIIFSFHKVDKARRRIKREMARKSLERRLRVLEL 228


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,754,616
Number of Sequences: 27780
Number of extensions: 182321
Number of successful extensions: 422
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 411
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 422
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2391724104
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)