Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP13_F_I22
(865 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC869.05c |||sulfate transporter |Schizosaccharomyces pombe|ch... 85 2e-17
SPBC3H7.02 |||sulfate transporter |Schizosaccharomyces pombe|chr... 84 3e-17
SPCC320.05 |||sulphate transporter |Schizosaccharomyces pombe|ch... 50 3e-07
SPAC24H6.11c |||sulfate transporter |Schizosaccharomyces pombe|c... 29 1.1
SPAC57A10.10c |sla1||La protein homolog|Schizosaccharomyces pomb... 28 1.5
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom... 27 3.4
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom... 27 3.4
SPBC887.17 |||uracil permease |Schizosaccharomyces pombe|chr 2||... 26 6.0
SPBC29A10.02 |spo5|mrb1, mug12, SPBC365.18|meiotic RNA-binding p... 26 6.0
SPBC27.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||M... 26 7.9
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 26 7.9
>SPAC869.05c |||sulfate transporter |Schizosaccharomyces pombe|chr
1|||Manual
Length = 840
Score = 84.6 bits (200), Expect = 2e-17
Identities = 39/95 (41%), Positives = 55/95 (57%)
Frame = +1
Query: 379 PVTAWLPQYNAEKAIGDLIAGITVGLTVIPQSLAYSNIAGLPPQHGLYGSFLGCFVYIVL 558
P+ WLP YN I DLIAGITVG V+PQ ++Y+ +A LP ++GLY SF+G +Y
Sbjct: 108 PIIEWLPNYNPYWLINDLIAGITVGCVVVPQGMSYAKVATLPSEYGLYSSFVGVAIYCFF 167
Query: 559 GGCRAVPAGPXXIASLLTWQVAGGGGREXHSADAP 663
+ V GP + SL+T +V + + AP
Sbjct: 168 ATSKDVSIGPVAVMSLITAKVIANVMAKDETYTAP 202
Score = 40.7 bits (91), Expect = 3e-04
Identities = 21/60 (35%), Positives = 33/60 (55%)
Frame = +2
Query: 638 EXAILLTLLAGIVELMMGVLGLGFLINFVSGPVSSGXTSAVXLMIATSQVKDMFAIQSPV 817
+ A L LLAG + +G+L LGF+I F+ P +G T+ L I + QV + ++ V
Sbjct: 203 QIATCLALLAGAITCGIGLLRLGFIIEFIPVPAVAGFTTGSALNILSGQVPALMGYKNKV 262
>SPBC3H7.02 |||sulfate transporter |Schizosaccharomyces pombe|chr
2|||Manual
Length = 877
Score = 83.8 bits (198), Expect = 3e-17
Identities = 37/86 (43%), Positives = 53/86 (61%)
Frame = +1
Query: 364 LHKRVPVTAWLPQYNAEKAIGDLIAGITVGLTVIPQSLAYSNIAGLPPQHGLYGSFLGCF 543
L P+ WLP+YN + D IAGITVG V+PQ ++Y+ +A LP Q+GLY SF+G
Sbjct: 116 LRSLFPIMNWLPRYNWNWLVYDFIAGITVGCVVVPQGMSYAKVATLPAQYGLYSSFVGVA 175
Query: 544 VYIVLGGCRAVPAGPXXIASLLTWQV 621
+Y + + V GP + SL+T +V
Sbjct: 176 IYCIFATSKDVSIGPVAVMSLVTSKV 201
Score = 42.7 bits (96), Expect = 6e-05
Identities = 23/69 (33%), Positives = 35/69 (50%)
Frame = +2
Query: 653 LTLLAGIVELMMGVLGLGFLINFVSGPVSSGXTSAVXLMIATSQVKDMFAIQSPVKPSSX 832
L LLAG + +G+L LGF+I F+ P +G T+ L I QV + +S V ++
Sbjct: 221 LALLAGAITCGLGLLRLGFIIEFIPVPAVAGFTTGSALNIMAGQVSSLMGYKSRVHTNAA 280
Query: 833 QWXSIFXKL 859
+ I L
Sbjct: 281 TYRVIIQTL 289
>SPCC320.05 |||sulphate transporter |Schizosaccharomyces pombe|chr
3|||Manual
Length = 667
Score = 50.4 bits (115), Expect = 3e-07
Identities = 22/72 (30%), Positives = 39/72 (54%), Gaps = 1/72 (1%)
Frame = +1
Query: 376 VPVTAWLPQYNAEKAIGDLIAGITVGLTVIPQSLAYS-NIAGLPPQHGLYGSFLGCFVYI 552
+PV WLP Y+ I D++AG + +P +L+++ G+PP + L G+ +G +Y
Sbjct: 63 IPVLHWLPNYSLRNIIWDVLAGCSTACLSVPIALSFAQTFLGVPPIYILTGTAIGPILYC 122
Query: 553 VLGGCRAVPAGP 588
+ C + GP
Sbjct: 123 LFTACPLISIGP 134
Score = 30.3 bits (65), Expect = 0.37
Identities = 15/45 (33%), Positives = 25/45 (55%)
Frame = +2
Query: 650 LLTLLAGIVELMMGVLGLGFLINFVSGPVSSGXTSAVXLMIATSQ 784
L+ +AGI+ L G+ LGFL VS + G ++ ++I +Q
Sbjct: 167 LIAFIAGIINLAAGLFRLGFLDALVSPVLLRGCILSISMIIMINQ 211
>SPAC24H6.11c |||sulfate transporter |Schizosaccharomyces pombe|chr
1|||Manual
Length = 958
Score = 28.7 bits (61), Expect = 1.1
Identities = 18/66 (27%), Positives = 31/66 (46%)
Frame = +2
Query: 650 LLTLLAGIVELMMGVLGLGFLINFVSGPVSSGXTSAVXLMIATSQVKDMFAIQSPVKPSS 829
L ++L G+V ++G+L LG LI F + G V + + V+ ++ V S
Sbjct: 263 LSSILTGLVFFILGILRLGRLIEFFPRHILLGCIGGVGSFLVLTAVEVSSRLEGSV---S 319
Query: 830 XQWXSI 847
W S+
Sbjct: 320 FNWASL 325
>SPAC57A10.10c |sla1||La protein homolog|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 298
Score = 28.3 bits (60), Expect = 1.5
Identities = 14/47 (29%), Positives = 22/47 (46%)
Frame = +2
Query: 167 ETSLPSAHLFWTTSPQNDSKTQTQRILRLPAASRRQERQQ*LHPVRR 307
+T+LP WTTS +ND Q I R Q + ++ +R+
Sbjct: 77 DTNLPHDKFLWTTSQKNDGWVPIQTIANFKRMRRFQPLEAIVNALRK 123
>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
pombe|chr 1||Partial|Manual
Length = 1887
Score = 27.1 bits (57), Expect = 3.4
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = +3
Query: 204 PAPKMIPRRKHNASSGSLPPPDDKNAS 284
P P + ++NAS S PPP N+S
Sbjct: 1603 PKPAIATHSRYNASFSSSPPPQPGNSS 1629
>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1919
Score = 27.1 bits (57), Expect = 3.4
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = +3
Query: 204 PAPKMIPRRKHNASSGSLPPPDDKNAS 284
P P + ++NAS S PPP N+S
Sbjct: 1603 PKPAIATHSRYNASFSSSPPPQPGNSS 1629
>SPBC887.17 |||uracil permease |Schizosaccharomyces pombe|chr
2|||Manual
Length = 625
Score = 26.2 bits (55), Expect = 6.0
Identities = 24/73 (32%), Positives = 34/73 (46%), Gaps = 3/73 (4%)
Frame = +1
Query: 421 IGDLI-AGITVGLTVIPQSLAYSNIAGLPPQHGLYGSFLGCFVYIV--LGGCRAVPAGPX 591
+GD I A IT+ L S+AY IAG+ + + L +Y + + R VPA
Sbjct: 457 LGDSIPAFITIALMPFTYSIAYGLIAGI-----ICYALLNSIIYAIDKMSRGRLVPA-DY 510
Query: 592 XIASLLTWQVAGG 630
TW+V GG
Sbjct: 511 NQKEAWTWRVEGG 523
>SPBC29A10.02 |spo5|mrb1, mug12, SPBC365.18|meiotic RNA-binding
protein 1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 567
Score = 26.2 bits (55), Expect = 6.0
Identities = 10/31 (32%), Positives = 17/31 (54%)
Frame = -2
Query: 744 PDETGPDTKLIKKPSPRTPIMSSTIPARSVS 652
P P ++ +P+ P+ S+T+P SVS
Sbjct: 197 PSLNQPGLHIVNQPTYLAPVPSATVPTNSVS 227
>SPBC27.04 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1052
Score = 25.8 bits (54), Expect = 7.9
Identities = 8/24 (33%), Positives = 15/24 (62%)
Frame = +3
Query: 69 ARVHRSAFAPRSHDDRRPRNPTPC 140
AR+HR F+ + ++ +P+ PC
Sbjct: 381 ARLHREGFSEAAENNDKPKETMPC 404
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 25.8 bits (54), Expect = 7.9
Identities = 18/54 (33%), Positives = 23/54 (42%), Gaps = 3/54 (5%)
Frame = +1
Query: 163 TGN-IAPIGPSLLDDQPPK*FQDAN-TTHPQAP-CRLPTTRTPAMTTSCSEGTS 315
TGN P+ P++ N TT P P T TP TT+C+ TS
Sbjct: 402 TGNSTTPVTPTVPPTSSSTPLTTTNCTTSTSVPYTSTPVTSTPLATTNCTTSTS 455
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,768,822
Number of Sequences: 5004
Number of extensions: 52728
Number of successful extensions: 207
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 180
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 206
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 430470850
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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