Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP13_F_I21
         (807 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    30   0.44 
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    29   0.78 
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    29   0.78 
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    26   5.5  

>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 29.9 bits (64), Expect = 0.44
 Identities = 11/24 (45%), Positives = 11/24 (45%)
 Frame = +2

Query: 695  PPXXXPXPXXPPPXPXXXPXXPPP 766
            PP   P P   PP P   P  PPP
Sbjct: 1710 PPMSVPPPPSAPPMPAGPPSAPPP 1733



 Score = 27.1 bits (57), Expect = 3.1
 Identities = 10/25 (40%), Positives = 11/25 (44%)
 Frame = +1

Query: 691  PPPPXXXXPXXAXPPXXXXPXXPPP 765
            PPPP    P  + PP    P   PP
Sbjct: 1708 PPPPMSVPPPPSAPPMPAGPPSAPP 1732



 Score = 26.2 bits (55), Expect = 5.5
 Identities = 10/25 (40%), Positives = 10/25 (40%)
 Frame = +3

Query: 690  PXPPXXXXPPXXXPPXXXXPXXXPP 764
            P PP    PP   PP    P   PP
Sbjct: 1708 PPPPMSVPPPPSAPPMPAGPPSAPP 1732



 Score = 25.4 bits (53), Expect = 9.6
 Identities = 11/32 (34%), Positives = 11/32 (34%)
 Frame = +1

Query: 694  PPPXXXXPXXAXPPXXXXPXXPPPXXXXXPXP 789
            PPP    P  A PP    P  P       P P
Sbjct: 1715 PPPPSAPPMPAGPPSAPPPPLPASSAPSVPNP 1746


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 29.1 bits (62), Expect = 0.78
 Identities = 14/38 (36%), Positives = 14/38 (36%), Gaps = 1/38 (2%)
 Frame = +2

Query: 695  PPXXXPXPXXPP-PXPXXXPXXPPPXXXXPXXPXPXXG 805
            PP   P    PP P P   P  P P    P  P P  G
Sbjct: 1140 PPVPKPSVAAPPVPAPSGAPPVPKPSVAAPPVPAPSSG 1177



 Score = 27.5 bits (58), Expect = 2.4
 Identities = 13/35 (37%), Positives = 13/35 (37%), Gaps = 1/35 (2%)
 Frame = +2

Query: 695  PPXXXPXPXXPP-PXPXXXPXXPPPXXXXPXXPXP 796
            PP   P    PP P P   P  P P    P  P P
Sbjct: 1102 PPVPKPSVAVPPVPAPSGAPPVPKPSVAAPPVPVP 1136



 Score = 27.5 bits (58), Expect = 2.4
 Identities = 13/35 (37%), Positives = 13/35 (37%), Gaps = 1/35 (2%)
 Frame = +2

Query: 695  PPXXXPXPXXPP-PXPXXXPXXPPPXXXXPXXPXP 796
            PP   P    PP P P   P  P P    P  P P
Sbjct: 1121 PPVPKPSVAAPPVPVPSGAPPVPKPSVAAPPVPAP 1155



 Score = 26.2 bits (55), Expect = 5.5
 Identities = 12/37 (32%), Positives = 12/37 (32%)
 Frame = +2

Query: 695  PPXXXPXPXXPPPXPXXXPXXPPPXXXXPXXPXPXXG 805
            PP   P    P P P       PP    P  P P  G
Sbjct: 1189 PPVPPPSEAPPVPKPSVGVPPVPPPSTAPPVPTPSAG 1225



 Score = 25.4 bits (53), Expect = 9.6
 Identities = 11/34 (32%), Positives = 11/34 (32%)
 Frame = +2

Query: 695  PPXXXPXPXXPPPXPXXXPXXPPPXXXXPXXPXP 796
            PP   P    P P P   P  P      P  P P
Sbjct: 1032 PPIPVPSTAPPVPIPTSTPPVPKSSSGAPSAPPP 1065



 Score = 25.4 bits (53), Expect = 9.6
 Identities = 13/38 (34%), Positives = 13/38 (34%), Gaps = 1/38 (2%)
 Frame = +2

Query: 695  PPXXXPXPXXPP-PXPXXXPXXPPPXXXXPXXPXPXXG 805
            PP   P    PP P P       PP    P  P P  G
Sbjct: 1169 PPVPAPSSGIPPVPKPAAGVPPVPPPSEAPPVPKPSVG 1206


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 29.1 bits (62), Expect = 0.78
 Identities = 14/38 (36%), Positives = 14/38 (36%), Gaps = 1/38 (2%)
 Frame = +2

Query: 695 PPXXXPXPXXPPPXPXXXPXXPP-PXXXXPXXPXPXXG 805
           PP   P    P P P   P  PP P    P  P P  G
Sbjct: 732 PPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPG 769


>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 26.2 bits (55), Expect = 5.5
 Identities = 10/15 (66%), Positives = 10/15 (66%)
 Frame = +2

Query: 656 GGGXGGGGGGXXXPP 700
           GGG GG GGG   PP
Sbjct: 187 GGGFGGFGGGSGGPP 201


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,591,252
Number of Sequences: 5004
Number of extensions: 19724
Number of successful extensions: 135
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 40
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 108
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 392429240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)