Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP13_F_I20
         (1039 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    32   0.12 
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    30   0.62 
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    27   4.3  
SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr...    27   4.3  
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1...    27   4.3  
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    26   7.6  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    26   7.6  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    26   7.6  

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 32.3 bits (70), Expect = 0.12
 Identities = 18/45 (40%), Positives = 18/45 (40%)
 Frame = +3

Query: 828 PXPXPLPXPXXPPGLXPHXXPXXXXXXXXXAGAAXXPPPPXXPPP 962
           P P P P P  PP       P         AGA   PPPP  PPP
Sbjct: 742 PTPAPAPIPVPPPA-PIMGGPPPPPPPPGVAGAG--PPPPPPPPP 783



 Score = 31.1 bits (67), Expect = 0.27
 Identities = 16/50 (32%), Positives = 17/50 (34%)
 Frame = +3

Query: 102 PXXPPPXXXXPXPXPPPXPGGXXAXHLFSXPPXRGXGXXXTXXPXGXPPP 251
           P  PPP    P P P P P    A  +   PP           P   PPP
Sbjct: 732 PPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPP 781



 Score = 27.1 bits (57), Expect = 4.3
 Identities = 10/21 (47%), Positives = 10/21 (47%)
 Frame = -3

Query: 380 GGXXPXXPPXFXCGGAXPPPP 318
           GG  P  PP    G   PPPP
Sbjct: 759 GGPPPPPPPPGVAGAGPPPPP 779


>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 29.9 bits (64), Expect = 0.62
 Identities = 18/58 (31%), Positives = 19/58 (32%), Gaps = 7/58 (12%)
 Frame = +3

Query: 819 PRPPXPXPLPXPXXPPGLXPH-----XXPXXXXXXXXXAGAAXXPPPPXXP--PPXXP 971
           P+   P P P P  PP L P        P               PPPP  P  PP  P
Sbjct: 229 PKQADPLPAPPPPPPPTLPPQSTNTSQLPMPSRNVNNLGSQVNIPPPPATPSQPPRPP 286



 Score = 27.1 bits (57), Expect = 4.3
 Identities = 9/15 (60%), Positives = 9/15 (60%)
 Frame = +3

Query: 621 PTPXXPPPPPPXXXP 665
           P P  PPPPPP   P
Sbjct: 234 PLPAPPPPPPPTLPP 248


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 27.1 bits (57), Expect = 4.3
 Identities = 10/21 (47%), Positives = 10/21 (47%)
 Frame = +3

Query: 102 PXXPPPXXXXPXPXPPPXPGG 164
           P  PPP    P   PPP P G
Sbjct: 11  PPPPPPGFEPPSQPPPPPPPG 31


>SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 305

 Score = 27.1 bits (57), Expect = 4.3
 Identities = 20/52 (38%), Positives = 20/52 (38%)
 Frame = -1

Query: 973 RGXXGGGXXGGGGXXAAPAXXXXXXXGXGXXWGXRPGGXXGXGRGXGXGGRG 818
           RG  GG   G GG               G   G R GG  G GRG   GGRG
Sbjct: 8   RGGRGGSRGGRGGFNGG----------RGGFGGGR-GGARGGGRGGARGGRG 48



 Score = 26.6 bits (56), Expect = 5.7
 Identities = 12/23 (52%), Positives = 12/23 (52%)
 Frame = -3

Query: 971 RXGGXGXXRGGGXXRRXCXGGRG 903
           R GG G  RGG   R    GGRG
Sbjct: 36  RGGGRGGARGGRGGRGGARGGRG 58



 Score = 26.2 bits (55), Expect = 7.6
 Identities = 20/52 (38%), Positives = 20/52 (38%)
 Frame = -1

Query: 973 RGXXGGGXXGGGGXXAAPAXXXXXXXGXGXXWGXRPGGXXGXGRGXGXGGRG 818
           RG   GG  G GG               G   G R GG  G GRG   GGRG
Sbjct: 18  RGGFNGGRGGFGGGRGGARGGGRGGARGGR--GGR-GGARG-GRGGSSGGRG 65


>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1841

 Score = 27.1 bits (57), Expect = 4.3
 Identities = 16/49 (32%), Positives = 16/49 (32%), Gaps = 1/49 (2%)
 Frame = +3

Query: 819  PRPPXPXPLPXPXXPPGLXPHXXPXXXXXXXXXAGAAXX-PPPPXXPPP 962
            P PP P PLP                       AG     PPPP  PPP
Sbjct: 905  PTPPPPPPLPVKTSLNTFSHPDSVNIVANDTSVAGVMPAFPPPPPPPPP 953



 Score = 23.0 bits (47), Expect(2) = 8.4
 Identities = 7/9 (77%), Positives = 7/9 (77%)
 Frame = +3

Query: 627 PXXPPPPPP 653
           P  PPPPPP
Sbjct: 945 PPPPPPPPP 953



 Score = 21.0 bits (42), Expect(2) = 8.4
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = +3

Query: 621 PTPXXPPPPP 650
           PTP  PPP P
Sbjct: 905 PTPPPPPPLP 914


>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 309

 Score = 26.2 bits (55), Expect = 7.6
 Identities = 16/51 (31%), Positives = 17/51 (33%), Gaps = 3/51 (5%)
 Frame = +3

Query: 819 PRPPXPXPLPXPXXPPGLXPHXXPXXXXXXXXXA---GAAXXPPPPXXPPP 962
           P    P P   P  P  L P   P         A    +A  P PP  PPP
Sbjct: 154 PASAPPIPSKAPPIPSSLPPPAQPAAPVKSPPSAPSLPSAVPPMPPKVPPP 204


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 26.2 bits (55), Expect = 7.6
 Identities = 17/47 (36%), Positives = 17/47 (36%), Gaps = 2/47 (4%)
 Frame = +3

Query: 825 PPXPXPLPXPXXPPGLXPHXXPXXXXXXXXXAGAAXXPPP--PXXPP 959
           PP P P   P  PP   P   P         A AA   PP  P  PP
Sbjct: 415 PPVPTP---PSLPPSAPPSLPPSAPPSLPMGAPAAPPLPPSAPIAPP 458


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 26.2 bits (55), Expect = 7.6
 Identities = 14/51 (27%), Positives = 15/51 (29%)
 Frame = +3

Query: 819  PRPPXPXPLPXPXXPPGLXPHXXPXXXXXXXXXAGAAXXPPPPXXPPPXXP 971
            P P    P+P P       P             AG    PPP   PP   P
Sbjct: 1153 PAPSGAPPVPKPSVAAPPVPAPSSGIPPVPKPAAGVPPVPPPSEAPPVPKP 1203


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.315    0.153    0.545 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,475,934
Number of Sequences: 5004
Number of extensions: 19598
Number of successful extensions: 183
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 142
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 543234592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)