Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP13_F_I18
(867 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_0824 - 32243495-32244319,32244449-32244859 44 1e-04
03_05_0293 + 22849103-22849513,22849670-22849756,22850156-228502... 38 0.014
01_01_1152 + 9170628-9171899 37 0.024
11_02_0011 - 7337618-7338496,7338596-7338991 36 0.055
03_05_0294 + 22855503-22855946,22856346-22856399 33 0.22
11_01_0750 - 6315126-6315896,6316371-6316784 32 0.68
09_06_0317 - 22265786-22267618,22267874-22268446,22268546-222686... 31 1.6
06_01_0059 - 510856-511499,511595-511805 29 4.8
11_02_0012 - 7346282-7347136,7347234-7347593 29 6.4
01_04_0112 - 16127785-16128279,16128883-16128986,16129304-16129454 29 6.4
11_01_0771 + 6453130-6454488 28 8.4
>01_06_0824 - 32243495-32244319,32244449-32244859
Length = 411
Score = 44.4 bits (100), Expect = 1e-04
Identities = 39/143 (27%), Positives = 66/143 (46%), Gaps = 10/143 (6%)
Frame = +1
Query: 244 DKNVIASPLGVMLLLSLYESGAGAQSKEEIREILG--GGEAQESTHTYGLLNQRYAEFDP 417
DKN+ SPL + L+L +GA ++ ++I LG GG A + ++ L + P
Sbjct: 31 DKNLAVSPLSLHAALALLGAGARGETLDQIIAFLGPAGGPAHAALASHVALCSLADDSGP 90
Query: 418 ------KFLTVANKIYVSDQYKLADAFSR-TANLFRSEVDXINF-SAPKNAADIINRWAD 573
+ AN ++V +L A++R A+ +R+E ++F + A IN W +
Sbjct: 91 GDDRGGPKVRFANGVWVDAALRLKAAYARVVADKYRAEARPVSFRDKLEEARREINEWFE 150
Query: 574 XXTQGHIXTPVSDDXIDPRPRAV 642
T G I + D +D AV
Sbjct: 151 SATAGRIKDFLPKDAVDRATPAV 173
>03_05_0293 +
22849103-22849513,22849670-22849756,22850156-22850284,
22850507-22851262,22853474-22854250
Length = 719
Score = 37.5 bits (83), Expect = 0.014
Identities = 16/45 (35%), Positives = 27/45 (60%)
Frame = +1
Query: 247 KNVIASPLGVMLLLSLYESGAGAQSKEEIREILGGGEAQESTHTY 381
+NV SPL + + LSL +GAG +++++ LGG + E H +
Sbjct: 35 RNVAFSPLSLHVALSLVAAGAGGATRDQLASALGGPGSAEGLHAF 79
>01_01_1152 + 9170628-9171899
Length = 423
Score = 36.7 bits (81), Expect = 0.024
Identities = 42/177 (23%), Positives = 72/177 (40%), Gaps = 5/177 (2%)
Frame = +1
Query: 247 KNVIASPLGVMLLLSLYESGAGAQSKEEIREILGG---GEAQESTHTYGLLNQRYAEFDP 417
+N I SPL L+L GA +++ E+ LG E S T + R+ P
Sbjct: 59 RNFIVSPLSFHAALALVADGARGETQRELLGFLGSPSLAELHRSPTTRLVARLRHL---P 115
Query: 418 KFLTVANKIYVSDQYKLADAFS-RTANLFRSEVDXINFSA-PKNAADIINRWADXXTQGH 591
+ A ++V L F+ A+ + + + +F+ P+ A + +N + T+G
Sbjct: 116 N-TSFACGVWVDRGRALTPEFADAAASRYAAVAEPADFATQPEQARERVNAFVSDATEGL 174
Query: 592 IXTPVSDDXIDPRPRAVXNVXRXFLPGGTGXVPFXASXTXXXDFHVDEXTIXKXPTM 762
I + + +D V F GT +PF S T FH+ + + P M
Sbjct: 175 IRDVLPPNSVDSSTVVVLANAVHFK--GTWSLPFHPSATFHAPFHLLDGGAVRAPFM 229
>11_02_0011 - 7337618-7338496,7338596-7338991
Length = 424
Score = 35.5 bits (78), Expect = 0.055
Identities = 40/172 (23%), Positives = 74/172 (43%), Gaps = 8/172 (4%)
Frame = +1
Query: 235 LADDKNVIASPLGVMLLLSLYESGAGAQSKEEIREILGGG---EAQESTH---TYGLLNQ 396
++ +KN++ SP + L+L +GA + +E+ +LG + +ES GL ++
Sbjct: 27 VSSNKNLVFSPASLYAALALVAAGARGTTLDELLALLGAASLDDLEESVRRAVEVGLADE 86
Query: 397 RYAEFDPKFLTVANKIYVSDQYKLADAF-SRTANLFRSEVDXINFS-APKNAADIINRWA 570
A P+ ++ A ++ + +L A+ + A +++ NF PK + IN+W
Sbjct: 87 S-ASGGPR-VSDACGVWHDETLELKPAYRAAAAGTYKAVTRAANFQRQPKRSRKKINKWV 144
Query: 571 DXXTQGHIXTPVSDDXIDPRPRAVXNVXRXFLPGGTGXVPFXASXTXXXDFH 726
T I + D + A+ V + G PF S T FH
Sbjct: 145 SKATNKLIPEILPDGSVHV-DTALVLVNAIYFKGKWSN-PFPRSSTTTGKFH 194
>03_05_0294 + 22855503-22855946,22856346-22856399
Length = 165
Score = 33.5 bits (73), Expect = 0.22
Identities = 25/105 (23%), Positives = 49/105 (46%), Gaps = 8/105 (7%)
Frame = +1
Query: 238 ADDKNVIASPLGVMLLLSLYESGAGAQSKEEIREILG--GGEAQESTHTYG--LLNQRYA 405
A NV SPL + + LSL +GAG +++++ +LG G E H + ++ A
Sbjct: 41 AGGSNVAFSPLSLHVALSLVAAGAGGATRDQLVSLLGVPGRGTAEGLHAFAEQVVQLVLA 100
Query: 406 EFDP---KFLTVANKIYVSDQYKLADAFSRTA-NLFRSEVDXINF 528
+ P + A+ +++ L +F A +++E ++F
Sbjct: 101 DSSPAGGPRVAFADGVFIDSSLSLMKSFKDVAVGKYKAETHSVDF 145
>11_01_0750 - 6315126-6315896,6316371-6316784
Length = 394
Score = 31.9 bits (69), Expect = 0.68
Identities = 35/137 (25%), Positives = 56/137 (40%), Gaps = 12/137 (8%)
Frame = +1
Query: 250 NVIASPLGVMLLLSLYESGAGAQSKEEIREILG------GGEAQE----STHTYGLLNQR 399
N S V + L+L GA ++ ++ + LG GG A S +L R
Sbjct: 33 NAAVSAPAVHVSLALAAGGARGATRRQVLQALGCGGGGRGGAADAANVASRVVKRVLRDR 92
Query: 400 YAEFDPKFLTVANKIYVSDQYKLADAFSRTA-NLFRSEVDXINF-SAPKNAADIINRWAD 573
P+ L A ++ L+ F A N++ S +F + P++A D IN W
Sbjct: 93 STSGGPR-LAFAGGVWADASRSLSPEFVGLAGNVYGSAAKKADFKNKPEDAPDQINSWVK 151
Query: 574 XXTQGHIXTPVSDDXID 624
T+G + T + ID
Sbjct: 152 DSTKGTVTTLLPAGTID 168
>09_06_0317 -
22265786-22267618,22267874-22268446,22268546-22268677,
22268931-22269137,22269287-22269388,22270742-22271032
Length = 1045
Score = 30.7 bits (66), Expect = 1.6
Identities = 14/31 (45%), Positives = 17/31 (54%)
Frame = -3
Query: 367 TLEPPLPQGFPLSLPWTVHRLQTRTRKAAAS 275
+L PPLP G PLS P+ QT + A S
Sbjct: 751 SLRPPLPPGLPLSSPFVCPTTQTSEKAAPLS 781
>06_01_0059 - 510856-511499,511595-511805
Length = 284
Score = 29.1 bits (62), Expect = 4.8
Identities = 22/72 (30%), Positives = 34/72 (47%), Gaps = 3/72 (4%)
Frame = +1
Query: 277 MLLLSLYESGAGAQSKEEIREILGGGEAQESTHTYGLLNQRYAEFD-PKFLTVANKIYVS 453
+LL + GAG S ++ GGG ++ H +G+ Q +A D LTV Y +
Sbjct: 197 LLLYVMNVGGAGDVSSLSVKTSGGGGAWIQAAHNWGITYQVFAALDNSDGLTVKLTTYST 256
Query: 454 DQYKL--ADAFS 483
Q + +DA S
Sbjct: 257 PQQTIIVSDAIS 268
>11_02_0012 - 7346282-7347136,7347234-7347593
Length = 404
Score = 28.7 bits (61), Expect = 6.4
Identities = 17/55 (30%), Positives = 29/55 (52%), Gaps = 5/55 (9%)
Frame = +1
Query: 217 LKESYNLADD-----KNVIASPLGVMLLLSLYESGAGAQSKEEIREILGGGEAQE 366
L+ + LADD +NV+ SP+ + L+L SGA + +E+ +LG +
Sbjct: 16 LRLAKRLADDGDNSNRNVVFSPVSLYAALALVASGARGTTLDELVALLGAASLDD 70
>01_04_0112 - 16127785-16128279,16128883-16128986,16129304-16129454
Length = 249
Score = 28.7 bits (61), Expect = 6.4
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = -3
Query: 856 HXGMGAPXTGNXDHLGAPIXRXQGKTMTVRNA 761
H G GA +G+ D G P+ Q +++ VR+A
Sbjct: 86 HGGRGASTSGSRDRAGKPLPPPQPQSLFVRSA 117
>11_01_0771 + 6453130-6454488
Length = 452
Score = 28.3 bits (60), Expect = 8.4
Identities = 14/40 (35%), Positives = 21/40 (52%)
Frame = +1
Query: 247 KNVIASPLGVMLLLSLYESGAGAQSKEEIREILGGGEAQE 366
+N+ SPL V LSL +GA + +EI +LG +
Sbjct: 37 RNLAFSPLSVHAALSLAAAGAAGGTLDEILAVLGAASRDD 76
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,606,127
Number of Sequences: 37544
Number of extensions: 433111
Number of successful extensions: 1101
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1069
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1101
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2432722788
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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