Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP13_F_I15
         (857 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC757.12 |||alpha-amylase homolog |Schizosaccharomyces pombe|c...    27   3.4  
SPCC1442.04c |||conserved fungal protein|Schizosaccharomyces pom...    27   4.5  
SPAC9.07c |||GTPase Rbg1 |Schizosaccharomyces pombe|chr 1|||Manual     26   6.0  
SPCC320.04c |||GTPase Gem1 |Schizosaccharomyces pombe|chr 3|||Ma...    26   6.0  
SPBC19F5.03 |||inositol polyphosphate phosphatase |Schizosacchar...    26   7.9  

>SPCC757.12 |||alpha-amylase homolog |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 625

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 13/26 (50%), Positives = 14/26 (53%)
 Frame = -3

Query: 318 STSSQSVQHTIGSLPRSPHTGGKDLS 241
           STSS    HTI S  +S HT G   S
Sbjct: 553 STSSSGSSHTITSTSQSVHTSGSSTS 578


>SPCC1442.04c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 409

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 12/37 (32%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
 Frame = -3

Query: 405 TLSMQASQDFLFIFSSRPYFLVRY--ILSMLSTSSQS 301
           T+     + F  +FS++P F+ RY  ++  +S+SS S
Sbjct: 297 TVHCDLEESFSIVFSTQPRFIARYNELVQAVSSSSNS 333


>SPAC9.07c |||GTPase Rbg1 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 366

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = +3

Query: 450 TSINTGMLKKKCHKINLSLVAPAGG 524
           T+ + GMLK K  K+   L+ P GG
Sbjct: 24  TAKHLGMLKAKLAKLKRELITPTGG 48


>SPCC320.04c |||GTPase Gem1 |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 630

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 20/74 (27%), Positives = 38/74 (51%), Gaps = 8/74 (10%)
 Frame = +2

Query: 284 PIVCCTD-CELVDNIDNIYLTKKYGRLEKINK-KSWDACI-----DNV-LNIPSYLCQSS 439
           PIV C +  E +DN   ++ T ++  +  IN+ K  +ACI     + + +N   Y+C++ 
Sbjct: 107 PIVLCENKSEDLDNYQGLH-TIEHEMIPLINEFKEIEACILCSALEKINVNELFYMCRAC 165

Query: 440 TTFDFDKYWDVKKK 481
             +     WD K++
Sbjct: 166 VIYPITPLWDAKER 179


>SPBC19F5.03 |||inositol polyphosphate phosphatase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 598

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = -3

Query: 519 RPVLPTTNLFCDIFFLTSQYLSKS 448
           R V+P  N+FC+I+   + Y+S S
Sbjct: 415 RSVIPLDNIFCNIWSDNADYISLS 438


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,215,907
Number of Sequences: 5004
Number of extensions: 66167
Number of successful extensions: 168
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 164
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 168
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 426466470
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)