Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP13_F_I15
(857 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_01_1073 + 8456426-8456677,8457039-8457152,8457546-8457710 30 2.7
05_01_0282 - 2191263-2192462 29 4.7
08_02_0032 + 11388092-11388179,11389159-11389565 29 6.3
02_03_0223 + 16570264-16570357,16570470-16570552,16570974-165710... 29 6.3
08_02_0746 + 20721421-20721649,20722912-20722971,20723318-207233... 28 8.3
06_03_0980 + 26520832-26520922,26521021-26521409,26521612-265219... 28 8.3
05_05_0267 - 23704249-23704401,23704476-23704780,23704967-237056... 28 8.3
05_01_0379 + 2975701-2976831 28 8.3
>01_01_1073 + 8456426-8456677,8457039-8457152,8457546-8457710
Length = 176
Score = 29.9 bits (64), Expect = 2.7
Identities = 22/64 (34%), Positives = 28/64 (43%)
Frame = +2
Query: 230 LDYRDRSFPPVCGLRGKEPIVCCTDCELVDNIDNIYLTKKYGRLEKINKKSWDACIDNVL 409
L YRD P LRG V D E V N + + YGR+ I + D C D
Sbjct: 94 LVYRDY---PTLKLRGVPKDVRSYDVERVRNKEQLSTRVGYGRVHSIIENILDKCGDIAP 150
Query: 410 NIPS 421
N+P+
Sbjct: 151 NLPT 154
>05_01_0282 - 2191263-2192462
Length = 399
Score = 29.1 bits (62), Expect = 4.7
Identities = 14/51 (27%), Positives = 25/51 (49%)
Frame = +2
Query: 305 CELVDNIDNIYLTKKYGRLEKINKKSWDACIDNVLNIPSYLCQSSTTFDFD 457
CE + N ++ + G L IN + WD+ I +V + Y C +F ++
Sbjct: 266 CECISNGILAFIGQSQGHLYYINFRDWDSSILSVWTLDDY-CSCGWSFKYN 315
>08_02_0032 + 11388092-11388179,11389159-11389565
Length = 164
Score = 28.7 bits (61), Expect = 6.3
Identities = 10/19 (52%), Positives = 15/19 (78%)
Frame = +3
Query: 282 SLSCAAPTVSSWTTSIIYI 338
SL+C P V +WTTS+++I
Sbjct: 81 SLACLDPHVGTWTTSVLHI 99
>02_03_0223 +
16570264-16570357,16570470-16570552,16570974-16571032,
16571607-16571665,16572276-16572325,16573575-16573612,
16574619-16574695,16575593-16576503
Length = 456
Score = 28.7 bits (61), Expect = 6.3
Identities = 25/84 (29%), Positives = 33/84 (39%), Gaps = 1/84 (1%)
Frame = -1
Query: 302 RCSTR*APCREARTPAGRIYPCSPG*VSRSACLARTCRCSRRGHTGPLQHQPRYF*S-RK 126
RC T R A P P SR CL+ +RR L+ P S R
Sbjct: 204 RCPTLPRKGRAASNTFSDCTPPPPRRPSRRGCLSWRPTMTRRASGSSLRRAPPPPTSPRH 263
Query: 125 EAQTPARTRHETSCVRTDRTATVP 54
A PA+ RH+ + +D + VP
Sbjct: 264 GASDPAQPRHQERRLASDHYSCVP 287
>08_02_0746 +
20721421-20721649,20722912-20722971,20723318-20723377,
20723458-20723553,20723764-20723871,20724037-20724090,
20724275-20724414,20724499-20724570,20724642-20724692,
20724943-20725017,20725205-20725585,20726372-20727604,
20727679-20727831
Length = 903
Score = 28.3 bits (60), Expect = 8.3
Identities = 14/62 (22%), Positives = 34/62 (54%)
Frame = +2
Query: 200 VLSKRCETLILDYRDRSFPPVCGLRGKEPIVCCTDCELVDNIDNIYLTKKYGRLEKINKK 379
V+ +R +I+D F +C K+ ++CC +++ +++ + + +KY +E+ KK
Sbjct: 628 VIRRRKYLVIVDLEKEDFNCICSKFEKDGLLCCHVLKVMLHLNAMKIPEKY-IIERWTKK 686
Query: 380 SW 385
+
Sbjct: 687 EY 688
>06_03_0980 +
26520832-26520922,26521021-26521409,26521612-26521927,
26522869-26523769,26524103-26524184
Length = 592
Score = 28.3 bits (60), Expect = 8.3
Identities = 14/42 (33%), Positives = 21/42 (50%)
Frame = +2
Query: 32 SLRFESVAAQSRYGRCAHKMSRAAFVLGSVLLSYFRSTVADV 157
S+RF ++ + RC M R A VL S + FRS + +
Sbjct: 437 SVRFNYLSRREDLARCVTGMRRVAKVLESTTMDVFRSAMGSL 478
>05_05_0267 -
23704249-23704401,23704476-23704780,23704967-23705674,
23707772-23708114,23708300-23708374,23708625-23708675,
23708747-23708818,23708903-23709042,23709227-23709280,
23709446-23709553,23709769-23709864,23709946-23710005,
23710352-23710411,23711699-23711927
Length = 817
Score = 28.3 bits (60), Expect = 8.3
Identities = 14/62 (22%), Positives = 34/62 (54%)
Frame = +2
Query: 200 VLSKRCETLILDYRDRSFPPVCGLRGKEPIVCCTDCELVDNIDNIYLTKKYGRLEKINKK 379
V+ +R +I+D F +C K+ ++CC +++ +++ + + +KY +E+ KK
Sbjct: 604 VIRRRKYLVIVDLEKEDFNCICSKFEKDGLLCCHVLKVMLHLNAMKIPEKY-IIERWTKK 662
Query: 380 SW 385
+
Sbjct: 663 EY 664
>05_01_0379 + 2975701-2976831
Length = 376
Score = 28.3 bits (60), Expect = 8.3
Identities = 10/16 (62%), Positives = 11/16 (68%)
Frame = -1
Query: 284 APCREARTPAGRIYPC 237
APCR+ PAGR Y C
Sbjct: 147 APCRDTLAPAGRCYVC 162
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,207,563
Number of Sequences: 37544
Number of extensions: 524080
Number of successful extensions: 1825
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1740
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1822
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2397465936
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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