Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP13_F_I14
         (1417 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    29   1.6  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    28   2.7  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    27   4.8  

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 29.1 bits (62), Expect = 1.6
 Identities = 13/25 (52%), Positives = 13/25 (52%)
 Frame = -1

Query: 88  PPASPXPXAXXGAXGAPPXXXPPPA 14
           PP  P P    GA G PP   PPPA
Sbjct: 761 PPPPPPPPGVAGA-GPPPPPPPPPA 784



 Score = 28.3 bits (60), Expect = 2.7
 Identities = 14/41 (34%), Positives = 15/41 (36%), Gaps = 3/41 (7%)
 Frame = -3

Query: 866 PSPXXPRTLXPXPXXFXXPXXXP---YGTXPPPPXXPAXXG 753
           P P  P  + P P     P   P    G  PPPP  P   G
Sbjct: 732 PPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAG 772


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 28.3 bits (60), Expect = 2.7
 Identities = 19/68 (27%), Positives = 21/68 (30%)
 Frame = -1

Query: 211  PSXXXSXPSIXGRXPPXXXPRSXXPPRGXXXXXXXXXLXSXPPASPXPXAXXGAXGAPPX 32
            PS     P      PP   P S  PP           +   PP S  P     + G PP 
Sbjct: 1155 PSGAPPVPKPSVAAPPVPAPSSGIPP----VPKPAAGVPPVPPPSEAPPVPKPSVGVPPV 1210

Query: 31   XXPPPAXP 8
              P  A P
Sbjct: 1211 PPPSTAPP 1218


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 27.5 bits (58), Expect = 4.8
 Identities = 15/51 (29%), Positives = 16/51 (31%), Gaps = 1/51 (1%)
 Frame = -3

Query: 911 PXXXPXXXLXXPRXPPSPXXPRTLXPXPXXF-XXPXXXPYGTXPPPPXXPA 762
           P   P   +  P  PP P       P P      P   P    PPP   PA
Sbjct: 433 PSAPPSLPMGAPAAPPLPPSAPIAPPLPAGMPAAPPLPPAAPAPPPAPAPA 483


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.315    0.144    0.455 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,619,599
Number of Sequences: 5004
Number of extensions: 15213
Number of successful extensions: 79
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 61
length of database: 2,362,478
effective HSP length: 75
effective length of database: 1,987,178
effective search space used: 786922488
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)