Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP13_F_I13
         (855 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17C9.16c ||SPAC9E9.16|MFS family transmembrane transporter M...    32   0.12 
SPAPB1E7.07 |glt1||glutamate synthase Glt1 |Schizosaccharomyces ...    31   0.16 
SPAC3A11.05c |kms1||meiotic spindle pole body protein Kms1|Schiz...    29   1.1  
SPCC1672.11c |||P-type ATPase |Schizosaccharomyces pombe|chr 3||...    27   4.5  

>SPAC17C9.16c ||SPAC9E9.16|MFS family transmembrane transporter
           Mfs1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 531

 Score = 31.9 bits (69), Expect = 0.12
 Identities = 21/81 (25%), Positives = 31/81 (38%)
 Frame = -1

Query: 531 FSAVVFITDSVFWYTWLSLTFFKXLIDVLGDLFPHRDAKFTF*VRALTDLALQYSSQSRD 352
           F A  FI  S+FW+ W        ++ ++G LF +    F         LA  Y      
Sbjct: 403 FPAAFFIPISLFWFGWTGRESVHWIVPIVGTLF-YASGSFLLFQSMFQYLAAAYPKYVAS 461

Query: 351 FIFDHGLARDSIQRVTGLPAR 289
               + L R S+   + L AR
Sbjct: 462 VFAGNALFRSSMAAASPLYAR 482


>SPAPB1E7.07 |glt1||glutamate synthase Glt1 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2111

 Score = 31.5 bits (68), Expect = 0.16
 Identities = 24/74 (32%), Positives = 36/74 (48%)
 Frame = +1

Query: 361  LRTVLQSKIRQSSDLKRKLGITVWKEITEDVNQGFEKRQRKPSIPKN*ICDKNDRREDVF 540
            +R  ++    Q +D++  LG TV K    D  +GF K QR+    +N +   ND +E + 
Sbjct: 1583 IRQQIEETNAQIADVEDTLGATVKKSAPLDKLRGFMKYQRRSEHYRNPLKRTNDWKE-LS 1641

Query: 541  DHRRHHGRRVQQAR 582
               R    RVQ AR
Sbjct: 1642 VRLREDELRVQTAR 1655


>SPAC3A11.05c |kms1||meiotic spindle pole body protein
           Kms1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 607

 Score = 28.7 bits (61), Expect = 1.1
 Identities = 17/56 (30%), Positives = 31/56 (55%), Gaps = 2/56 (3%)
 Frame = +1

Query: 385 IRQSSDLK--RKLGITVWKEITEDVNQGFEKRQRKPSIPKN*ICDKNDRREDVFDH 546
           +RQ++DL   +     V+K++TE+ +  F  +  KPS+ +     KN  +ED  +H
Sbjct: 58  VRQNADLSITKDNFRDVYKKLTENEDDSFANQAEKPSMEQQ--NSKNSIKEDANEH 111


>SPCC1672.11c |||P-type ATPase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1315

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 18/60 (30%), Positives = 28/60 (46%)
 Frame = -1

Query: 603 DSELRX*PSLLDTPAVMPPMIEDVFSAVVFITDSVFWYTWLSLTFFKXLIDVLGDLFPHR 424
           D EL+    LL    + P  I  VFS +++  DS ++Y    L     ++ +LG L   R
Sbjct: 316 DLELKSVSQLLIDEVLHPFYIFQVFSIILWSMDSYYYYAICILII--SVVSILGSLIETR 373


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,748,492
Number of Sequences: 5004
Number of extensions: 51591
Number of successful extensions: 132
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 128
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 132
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 424464280
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)