Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP13_F_I12
         (868 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC088362-1|AAH88362.1|  724|Homo sapiens DEAD (Asp-Glu-Ala-Asp) ...    33   1.3  
AY004154-1|AAF86585.1|  724|Homo sapiens DEAD box RNA helicase p...    33   1.3  
AL137462-1|CAB70750.1|  635|Homo sapiens hypothetical protein pr...    33   1.3  
AF262962-1|AAF72705.1|  724|Homo sapiens VASA protein protein.         33   1.3  

>BC088362-1|AAH88362.1|  724|Homo sapiens DEAD (Asp-Glu-Ala-Asp) box
           polypeptide 4 protein.
          Length = 724

 Score = 33.1 bits (72), Expect = 1.3
 Identities = 22/61 (36%), Positives = 28/61 (45%), Gaps = 1/61 (1%)
 Frame = -1

Query: 754 RRHGFPK-GXKADRYSGKRQGRNREXARGSFQGETPGIFIVLSGFATSDLSVDFCXARSG 578
           R  GF K G   D  + +  G  R   RGSF+G   G  +   G   +DL  D C  R+G
Sbjct: 123 RNRGFSKRGGYRDGNNSEASGPYRRGGRGSFRGCRGGFGL---GSPNNDLDPDECMQRTG 179

Query: 577 G 575
           G
Sbjct: 180 G 180


>AY004154-1|AAF86585.1|  724|Homo sapiens DEAD box RNA helicase
           protein.
          Length = 724

 Score = 33.1 bits (72), Expect = 1.3
 Identities = 22/61 (36%), Positives = 28/61 (45%), Gaps = 1/61 (1%)
 Frame = -1

Query: 754 RRHGFPK-GXKADRYSGKRQGRNREXARGSFQGETPGIFIVLSGFATSDLSVDFCXARSG 578
           R  GF K G   D  + +  G  R   RGSF+G   G  +   G   +DL  D C  R+G
Sbjct: 123 RNRGFSKRGGYRDGNNSEASGPYRRGGRGSFRGCRGGFGL---GSPNNDLDPDECMQRTG 179

Query: 577 G 575
           G
Sbjct: 180 G 180


>AL137462-1|CAB70750.1|  635|Homo sapiens hypothetical protein
           protein.
          Length = 635

 Score = 33.1 bits (72), Expect = 1.3
 Identities = 22/61 (36%), Positives = 28/61 (45%), Gaps = 1/61 (1%)
 Frame = -1

Query: 754 RRHGFPK-GXKADRYSGKRQGRNREXARGSFQGETPGIFIVLSGFATSDLSVDFCXARSG 578
           R  GF K G   D  + +  G  R   RGSF+G   G  +   G   +DL  D C  R+G
Sbjct: 34  RNRGFSKRGGYRDGNNSEASGPYRRGGRGSFRGCRGGFGL---GSPNNDLDPDECMQRTG 90

Query: 577 G 575
           G
Sbjct: 91  G 91


>AF262962-1|AAF72705.1|  724|Homo sapiens VASA protein protein.
          Length = 724

 Score = 33.1 bits (72), Expect = 1.3
 Identities = 22/61 (36%), Positives = 28/61 (45%), Gaps = 1/61 (1%)
 Frame = -1

Query: 754 RRHGFPK-GXKADRYSGKRQGRNREXARGSFQGETPGIFIVLSGFATSDLSVDFCXARSG 578
           R  GF K G   D  + +  G  R   RGSF+G   G  +   G   +DL  D C  R+G
Sbjct: 123 RNRGFSKRGGYRDGNNSEASGPYRRGGRGSFRGCRGGFGL---GSPNNDLDPDECMQRTG 179

Query: 577 G 575
           G
Sbjct: 180 G 180


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 104,766,058
Number of Sequences: 237096
Number of extensions: 2109917
Number of successful extensions: 5229
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4821
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5224
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 11095746082
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)