Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP13_F_I10
         (878 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    23   3.7  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    23   3.7  
DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    23   4.9  
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    23   4.9  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    23   4.9  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    22   6.5  

>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 23.0 bits (47), Expect = 3.7
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = -3

Query: 651  ALKTLKLSLSRCIQVWSRPARRNS 580
            +LK LKL L   +  WSRP+ +N+
Sbjct: 1893 SLKKLKLGLRSSL--WSRPSTQNN 1914


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 23.0 bits (47), Expect = 3.7
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = -3

Query: 651  ALKTLKLSLSRCIQVWSRPARRNS 580
            +LK LKL L   +  WSRP+ +N+
Sbjct: 1889 SLKKLKLGLRSSL--WSRPSTQNN 1910


>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
           isoform B protein.
          Length = 931

 Score = 22.6 bits (46), Expect = 4.9
 Identities = 16/85 (18%), Positives = 38/85 (44%)
 Frame = -3

Query: 801 VSVXQYXMNFLSEGLKXSSSSNAKRTSLMTILLCIINSKTVGTYVRKPNRALKTLKLSLS 622
           V + Q  M+  ++  + S++  A  + +  ++L  +  K     V   N   ++   +L 
Sbjct: 377 VYLYQNTMSNNNQRTEWSATVKAAISEVQRVVLGRLCEKVAKQLVNSVNCLRESFIGTLQ 436

Query: 621 RCIQVWSRPARRNSCFLENERPRSI 547
           RC+    +   R++C L ++  + I
Sbjct: 437 RCLLSLEKTYERDTCLLASDALKQI 461


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
           isoform A protein.
          Length = 969

 Score = 22.6 bits (46), Expect = 4.9
 Identities = 16/85 (18%), Positives = 38/85 (44%)
 Frame = -3

Query: 801 VSVXQYXMNFLSEGLKXSSSSNAKRTSLMTILLCIINSKTVGTYVRKPNRALKTLKLSLS 622
           V + Q  M+  ++  + S++  A  + +  ++L  +  K     V   N   ++   +L 
Sbjct: 415 VYLYQNTMSNNNQRTEWSATVKAAISEVQRVVLGRLCEKVAKQLVNSVNCLRESFIGTLQ 474

Query: 621 RCIQVWSRPARRNSCFLENERPRSI 547
           RC+    +   R++C L ++  + I
Sbjct: 475 RCLLSLEKTYERDTCLLASDALKQI 499


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 22.6 bits (46), Expect = 4.9
 Identities = 7/11 (63%), Positives = 10/11 (90%)
 Frame = -2

Query: 835 EKVXTDPNSHY 803
           EK+ TDPN+H+
Sbjct: 681 EKLSTDPNTHF 691


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
            protein.
          Length = 1308

 Score = 22.2 bits (45), Expect = 6.5
 Identities = 8/22 (36%), Positives = 15/22 (68%)
 Frame = -2

Query: 655  PGPKDVKTLTFSLYSGLVAPST 590
            P P  +KT   ++Y+ ++AP+T
Sbjct: 1260 PTPAGLKTTGAAVYARVIAPTT 1281


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 196,752
Number of Sequences: 438
Number of extensions: 3936
Number of successful extensions: 14
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28523595
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)