Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP13_F_I09
(909 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 42 9e-05
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 40 6e-04
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 36 0.008
SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase Y|Schizosacch... 33 0.042
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 33 0.056
SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr 1... 31 0.17
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 31 0.23
SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc... 31 0.23
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ... 31 0.30
SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyc... 30 0.39
SPBC83.01 |ucp8||UBA/EH/EF hand domain protein Ucp8|Schizosaccha... 29 0.91
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 28 1.6
SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein Sap49|Schizo... 28 1.6
SPAC26A3.16 |dph1|ucp5|UBA domain protein Dph1|Schizosaccharomyc... 28 2.1
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo... 28 2.1
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe... 27 3.7
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M... 27 4.9
SPBC902.04 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 27 4.9
SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr... 26 6.4
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 42.3 bits (95), Expect = 9e-05
Identities = 30/100 (30%), Positives = 33/100 (33%), Gaps = 4/100 (4%)
Frame = +3
Query: 612 PPXPXAFXPLATXPSXXPXLFPTPARXPXXPVPPLLPXRGTPWPXXPXPPXLGXVXSXFR 791
PP P P + P+ P + P P PP LP P PP L
Sbjct: 388 PPAPPPAIPGRSAPALPPLGNASRTSTPPVPTPPSLPPSAPPSLPPSAPPSLPMGAPAAP 447
Query: 792 XYRPXAP--PXRPXXCPNPP--XPXPPXPPPXPRXTHXXP 899
P AP P P P P P P PPP P P
Sbjct: 448 PLPPSAPIAPPLPAGMPAAPPLPPAAPAPPPAPAPAPAAP 487
Score = 34.3 bits (75), Expect = 0.024
Identities = 30/90 (33%), Positives = 33/90 (36%), Gaps = 2/90 (2%)
Frame = +3
Query: 609 LPPXPXAFXPLATXPSXXPXLFPTPARXPXXP--VPPLLPXRGTPWPXXPXPPXLGXVXS 782
LPP A +T P P P P+ P P PP LP G P P PP +
Sbjct: 403 LPPLGNASRT-STPPVPTPPSLP-PSAPPSLPPSAPPSLPM-GAP-AAPPLPPS-APIAP 457
Query: 783 XFRXYRPXAPPXRPXXCPNPPXPXPPXPPP 872
P APP P PP P P P
Sbjct: 458 PLPAGMPAAPPLPPAAPAPPPAPAPAPAAP 487
Score = 31.1 bits (67), Expect = 0.23
Identities = 28/107 (26%), Positives = 32/107 (29%)
Frame = +3
Query: 582 PXWXKPEQDLPPXPXAFXPLATXPSXXPXLFPTPARXPXXPVPPLLPXRGTPWPXXPXPP 761
P P P P + + P P P + +PPL T P P PP
Sbjct: 365 PPRSAPSTGRQPPPLSSSRAVSNPPAPPPAIPGRSAPA---LPPLGNASRTSTPPVPTPP 421
Query: 762 XLGXVXSXFRXYRPXAPPXRPXXCPNPPXPXPPXPPPXPRXTHXXPP 902
L P APP P P P PP P PP
Sbjct: 422 SLP----------PSAPPSLPPSAPPSLPMGAPAAPPLPPSAPIAPP 458
Score = 26.6 bits (56), Expect = 4.9
Identities = 23/76 (30%), Positives = 24/76 (31%), Gaps = 3/76 (3%)
Frame = +3
Query: 687 RXPXXPVPPLLPXRGTPWPXXPXPPXLGXVXSXFRXYRPXAPPXRPXXCPNPPXPXPPXP 866
+ P P PP RG P P G S P P PP P
Sbjct: 309 KRPPPPPPPSRRNRGKP------PIGNGSSNSSLPPPPPPPRSNAAGSIPLPPQGRSAPP 362
Query: 867 PPXPR---XTHXXPPP 905
PP PR T PPP
Sbjct: 363 PPPPRSAPSTGRQPPP 378
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 39.5 bits (88), Expect = 6e-04
Identities = 27/97 (27%), Positives = 30/97 (30%)
Frame = +3
Query: 582 PXWXKPEQDLPPXPXAFXPLATXPSXXPXLFPTPARXPXXPVPPLLPXRGTPWPXXPXPP 761
P KP PP P P P P + P P +PP+ P P P P
Sbjct: 1140 PPVPKPSVAAPPVPA---PSGAPPVPKPSVAAPPVPAPSSGIPPV-PKPAAGVPPVPPPS 1195
Query: 762 XLGXVXSXFRXYRPXAPPXRPXXCPNPPXPXPPXPPP 872
V P PP P P PP P P
Sbjct: 1196 EAPPVPKPSVGVPPVPPPSTAPPVPTPSAGLPPVPVP 1232
Score = 39.1 bits (87), Expect = 9e-04
Identities = 28/95 (29%), Positives = 35/95 (36%), Gaps = 1/95 (1%)
Frame = +3
Query: 621 PXAFXPLATXPSXXPXLFPTPARXPXXPVPPLLPXRGTPWPXXPXPPXLGXVXSXFRXYR 800
P A P+ S P + P P+ P P P +P P P PP +
Sbjct: 1060 PSAPPPVPAPSSEIPSI-PAPSGAPPVPAPSGIPP--VPKPSVAAPPVPKPSVAVPPVPA 1116
Query: 801 PX-APPXRPXXCPNPPXPXPPXPPPXPRXTHXXPP 902
P APP PP P P PP P+ + PP
Sbjct: 1117 PSGAPPVPKPSVAAPPVPVPSGAPPVPKPSVAAPP 1151
Score = 38.7 bits (86), Expect = 0.001
Identities = 30/105 (28%), Positives = 36/105 (34%), Gaps = 9/105 (8%)
Frame = +3
Query: 615 PXPXAFXPLATXPSXXPXLFPTPARXPXXPVP----PLLPXRGTPWPXXPXPPXLGXVXS 782
P P + P PS P + P P+ P P P P +P P P P V
Sbjct: 1067 PAPSSEIPSIPAPSGAPPV-PAPSGIPPVPKPSVAAPPVPKPSVAVPPVPAPSGAPPVPK 1125
Query: 783 XFRXYRPX-----APPXRPXXCPNPPXPXPPXPPPXPRXTHXXPP 902
P APP PP P P PP P+ + PP
Sbjct: 1126 PSVAAPPVPVPSGAPPVPKPSVAAPPVPAPSGAPPVPKPSVAAPP 1170
Score = 37.9 bits (84), Expect = 0.002
Identities = 31/109 (28%), Positives = 35/109 (32%), Gaps = 2/109 (1%)
Frame = +3
Query: 582 PXWXKPEQDLPPXPX-AFXPLATXPSXXPXLFPTPARXPXXPVPPLLPXRGTPWPXXPXP 758
P KP PP P + P PS P P+ P P P + P P P
Sbjct: 1121 PPVPKPSVAAPPVPVPSGAPPVPKPSVAAPPVPAPSGAPPVPKPSVAAPP-VPAPSSGIP 1179
Query: 759 PXLGXVXSXFRXYRPX-APPXRPXXCPNPPXPXPPXPPPXPRXTHXXPP 902
P P APP PP P P PP P + PP
Sbjct: 1180 PVPKPAAGVPPVPPPSEAPPVPKPSVGVPPVPPPSTAPPVPTPSAGLPP 1228
Score = 37.1 bits (82), Expect = 0.003
Identities = 39/146 (26%), Positives = 43/146 (29%), Gaps = 2/146 (1%)
Frame = +3
Query: 474 AKGQQKAXXRKXAXLLAFFHXLRPP*TSLTKIHAQXPXWXKPEQDLPPXPXAFXPLATXP 653
A G + A L + L P + K H KP P P A P
Sbjct: 958 ASGPRPAAPPSIPPPLPVSNILSSPTSEPPKDHPPSAPLSKPVSTSPAAPLARVPPVPKL 1017
Query: 654 SXXPXLFPTP-ARXPXXPVPPLLPXRGTPWPXXPXPPXLGXVXSXFRXYRPXAPPXRPXX 830
S P P A P PVP P P P P P APP P
Sbjct: 1018 SSKAPPVPLPSADAPPIPVPSTAPPVPIPTSTPPVPKSSSGA--------PSAPPPVPAP 1069
Query: 831 CPN-PPXPXPPXPPPXPRXTHXXPPP 905
P P P PP P + P P
Sbjct: 1070 SSEIPSIPAPSGAPPVPAPSGIPPVP 1095
Score = 27.1 bits (57), Expect = 3.7
Identities = 20/65 (30%), Positives = 25/65 (38%), Gaps = 3/65 (4%)
Frame = +3
Query: 573 AQXPXWXKPEQDLPPXPX-AFXPLATXPSXXPXLFPTP-ARXPXXPVPPL-LPXRGTPWP 743
++ P KP +PP P + P PS P P A+ P P P P TP
Sbjct: 1195 SEAPPVPKPSVGVPPVPPPSTAPPVPTPSAGLPPVPVPTAKAPPVPAPSSEAPSVSTPRS 1254
Query: 744 XXPXP 758
P P
Sbjct: 1255 SVPSP 1259
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 35.9 bits (79), Expect = 0.008
Identities = 28/103 (27%), Positives = 33/103 (32%), Gaps = 5/103 (4%)
Frame = +3
Query: 612 PPXPXAFXPLATXPSXXPXLFPTPARXPXXPVP-----PLLPXRGTPWPXXPXPPXLGXV 776
PP P + P+ + P P PA+ P PV P LP P P PP L
Sbjct: 151 PPSPASAPPIPSKAPPIPSSLPPPAQ-PAAPVKSPPSAPSLPSAVPPMPPKVPPPPLSQA 209
Query: 777 XSXFRXYRPXAPPXRPXXCPNPPXPXPPXPPPXPRXTHXXPPP 905
RP + PN P P P PP
Sbjct: 210 PVANTSSRPSSFAPPAGHAPNVTSESPKFPNRGPSIPSASVPP 252
Score = 33.9 bits (74), Expect = 0.032
Identities = 20/76 (26%), Positives = 26/76 (34%)
Frame = +3
Query: 651 PSXXPXLFPTPARXPXXPVPPLLPXRGTPWPXXPXPPXLGXVXSXFRXYRPXAPPXRPXX 830
P+ L P + P +PP P P P PP + + P P
Sbjct: 131 PTPQSELRPPTSAPPRPSIPPPSPASAPPIPSKA-PPIPSSLPPPAQPAAPVKSPPSAPS 189
Query: 831 CPNPPXPXPPXPPPXP 878
P+ P PP PP P
Sbjct: 190 LPSAVPPMPPKVPPPP 205
Score = 30.3 bits (65), Expect = 0.39
Identities = 13/35 (37%), Positives = 14/35 (40%)
Frame = +3
Query: 801 PXAPPXRPXXCPNPPXPXPPXPPPXPRXTHXXPPP 905
P + P RP P P PP P P PPP
Sbjct: 140 PTSAPPRPSIPPPSPASAPPIPSKAPPIPSSLPPP 174
Score = 27.5 bits (58), Expect = 2.8
Identities = 12/35 (34%), Positives = 12/35 (34%)
Frame = +3
Query: 798 RPXAPPXRPXXCPNPPXPXPPXPPPXPRXTHXXPP 902
RP PP P P P PP P P P
Sbjct: 146 RPSIPPPSPASAPPIPSKAPPIPSSLPPPAQPAAP 180
Score = 26.2 bits (55), Expect = 6.4
Identities = 24/89 (26%), Positives = 27/89 (30%), Gaps = 2/89 (2%)
Frame = +3
Query: 609 LPPXPXAFXPLATXPSXXPXLFPTPARXPXXPVPPL--LPXRGTPWPXXPXPPXLGXVXS 782
LPP P+ + PS P P P PPL P T P G +
Sbjct: 171 LPPPAQPAAPVKSPPSAPSLPSAVPPMPPKVPPPPLSQAPVANTSSRPSSFAPPAGHAPN 230
Query: 783 XFRXYRPXAPPXRPXXCPNPPXPXPPXPP 869
P P P P PP PP
Sbjct: 231 -VTSESPKFPNRGPSI---PSASVPPVPP 255
>SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase
Y|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1002
Score = 33.5 bits (73), Expect = 0.042
Identities = 35/145 (24%), Positives = 44/145 (30%), Gaps = 1/145 (0%)
Frame = +3
Query: 474 AKGQQKAXXRKXAXLLAFFHXLRPP*TSLTKIHAQXPXWXKPEQDLPPXPXAFXPLATXP 653
AKG+ K K FF RP + P +P + +PP P P P
Sbjct: 162 AKGKGKKSHPKPEDDSVFFDDERPKHHEFDDEDREFPAHHEPGEHMPPPPMHHKPGEHMP 221
Query: 654 SXXPXLFPTPARXPXXPVPPLLPXRGTPWPXXPXPPXLG-XVXSXFRXYRPXAPPXRPXX 830
P + P P PP+ G P P G + + P P
Sbjct: 222 --PPPMHHEPGE--HMPPPPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPPPPM 277
Query: 831 CPNPPXPXPPXPPPXPRXTHXXPPP 905
P PP P H PPP
Sbjct: 278 HHEPGEHMPPPPMHHEPGEHMPPPP 302
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 33.1 bits (72), Expect = 0.056
Identities = 24/76 (31%), Positives = 26/76 (34%)
Frame = +3
Query: 651 PSXXPXLFPTPARXPXXPVPPLLPXRGTPWPXXPXPPXLGXVXSXFRXYRPXAPPXRPXX 830
P + PTPA P PVPP P G P P P PP + P PP P
Sbjct: 734 PPPPAVIVPTPAPAPI-PVPPPAPIMGGP-PPPPPPPGVAGAGP------PPPPPPPPAV 785
Query: 831 CPNPPXPXPPXPPPXP 878
P P P
Sbjct: 786 SAGGSRYYAPAPQAEP 801
Score = 31.1 bits (67), Expect = 0.23
Identities = 14/33 (42%), Positives = 14/33 (42%)
Frame = +3
Query: 807 APPXRPXXCPNPPXPXPPXPPPXPRXTHXXPPP 905
AP P P P PP PPP P PPP
Sbjct: 745 APAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPP 777
Score = 30.3 bits (65), Expect = 0.39
Identities = 22/71 (30%), Positives = 25/71 (35%), Gaps = 3/71 (4%)
Frame = +3
Query: 612 PPXPXAFXPLATXPSXXPXLFPTPARXPXXPVPPLLP---XRGTPWPXXPXPPXLGXVXS 782
PP P P P+ P P PA P PP P P P P PP + S
Sbjct: 734 PPPPAVIVPT---PAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPPAVSAGGS 790
Query: 783 XFRXYRPXAPP 815
+ P A P
Sbjct: 791 RYYAPAPQAEP 801
Score = 29.5 bits (63), Expect = 0.69
Identities = 22/71 (30%), Positives = 23/71 (32%)
Frame = +3
Query: 612 PPXPXAFXPLATXPSXXPXLFPTPARXPXXPVPPLLPXRGTPWPXXPXPPXLGXVXSXFR 791
PP P A P+ P P P P PP G P P PP R
Sbjct: 733 PPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPP-AVSAGGSR 791
Query: 792 XYRPXAPPXRP 824
Y P AP P
Sbjct: 792 YYAP-APQAEP 801
Score = 29.1 bits (62), Expect = 0.91
Identities = 14/33 (42%), Positives = 14/33 (42%), Gaps = 1/33 (3%)
Frame = +3
Query: 810 PPXRPXXCPNPPXPXP-PXPPPXPRXTHXXPPP 905
PP P P P P P PPP P PPP
Sbjct: 733 PPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPP 765
Score = 28.3 bits (60), Expect = 1.6
Identities = 13/33 (39%), Positives = 13/33 (39%)
Frame = +3
Query: 807 APPXRPXXCPNPPXPXPPXPPPXPRXTHXXPPP 905
AP P P P PP PPP PPP
Sbjct: 747 APIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPP 779
Score = 27.1 bits (57), Expect = 3.7
Identities = 17/49 (34%), Positives = 18/49 (36%), Gaps = 6/49 (12%)
Frame = +3
Query: 750 PXPPXLGXVXSXFRXYRPXAPPXRPXXCPNPPXPXP------PXPPPXP 878
P PP V + P PP P PP P P P PPP P
Sbjct: 733 PPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPP 781
>SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 857
Score = 31.5 bits (68), Expect = 0.17
Identities = 26/98 (26%), Positives = 29/98 (29%), Gaps = 1/98 (1%)
Frame = +3
Query: 615 PXPXAFXPLATXPSXX-PXLFPTPARXPXXPVPPLLPXRGTPWPXXPXPPXLGXVXSXFR 791
P P A + PS P P P P P P P P P + V
Sbjct: 515 PQPPAAPVVPEAPSVHQPPAAPVAPEVPSAPQRPAAPVVPEA-PSVPQRPAVPVVPEALS 573
Query: 792 XYRPXAPPXRPXXCPNPPXPXPPXPPPXPRXTHXXPPP 905
+P P P P P PP P P PP
Sbjct: 574 VPQPPVAPVAPEV---PSVPQPPVAPVVPEAPSVPQPP 608
Score = 31.5 bits (68), Expect = 0.17
Identities = 28/104 (26%), Positives = 32/104 (30%), Gaps = 1/104 (0%)
Frame = +3
Query: 597 PEQDLPPXPXAFXPLATXPSXX-PXLFPTPARXPXXPVPPLLPXRGTPWPXXPXPPXLGX 773
PE P P + PS P + P P P P +P P P PP
Sbjct: 584 PEVPSVPQPPVAPVVPEAPSVPQPPVAPVAPEVPSVPQRPAVPVVPEA-PSVPQPPAAPV 642
Query: 774 VXSXFRXYRPXAPPXRPXXCPNPPXPXPPXPPPXPRXTHXXPPP 905
V + A P P P P PP P P PP
Sbjct: 643 VPEVPSVPQRPAVPVVPEA---PSVPQPPAAPVVPEVPSVPQPP 683
Score = 29.9 bits (64), Expect = 0.52
Identities = 22/77 (28%), Positives = 25/77 (32%), Gaps = 1/77 (1%)
Frame = +3
Query: 597 PEQDLPPXPXAFXPLATXPSXXPX-LFPTPARXPXXPVPPLLPXRGTPWPXXPXPPXLGX 773
PE P P A + PS P P P PP P P P PP +
Sbjct: 629 PEAPSVPQPPAAPVVPEVPSVPQRPAVPVVPEAPSVPQPPAAPVVPEV-PSVPQPPAVPV 687
Query: 774 VXSXFRXYRPXAPPXRP 824
V + P PP P
Sbjct: 688 VPEAGQLNEPVVPPLPP 704
Score = 27.5 bits (58), Expect = 2.8
Identities = 27/103 (26%), Positives = 29/103 (28%), Gaps = 1/103 (0%)
Frame = +3
Query: 597 PEQDLPPXPXAFXPLATXPSXXPX-LFPTPARXPXXPVPPLLPXRGTPWPXXPXPPXLGX 773
PE P P PS P P P PP P P P P +
Sbjct: 599 PEAPSVPQPPVAPVAPEVPSVPQRPAVPVVPEAPSVPQPPAAPVVPEV-PSVPQRPAVPV 657
Query: 774 VXSXFRXYRPXAPPXRPXXCPNPPXPXPPXPPPXPRXTHXXPP 902
V +P A P P P P PP P P P
Sbjct: 658 VPEAPSVPQPPAAPVVPEV---PSVPQPPAVPVVPEAGQLNEP 697
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 31.1 bits (67), Expect = 0.23
Identities = 15/36 (41%), Positives = 15/36 (41%), Gaps = 3/36 (8%)
Frame = +3
Query: 807 APPXRPXXCPNPPX---PXPPXPPPXPRXTHXXPPP 905
APP P PP P PP PP P PPP
Sbjct: 1698 APPQMSAPTPPPPPMSVPPPPSAPPMPAGPPSAPPP 1733
Score = 27.5 bits (58), Expect = 2.8
Identities = 14/32 (43%), Positives = 14/32 (43%)
Frame = +3
Query: 810 PPXRPXXCPNPPXPXPPXPPPXPRXTHXXPPP 905
PP RP PP P PPP P PPP
Sbjct: 1690 PPVRPQSAA-PPQMSAPTPPPPPMSV--PPPP 1718
>SPAC29B12.07 |sec16||multidomain vesicle coat component
Sec16|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1995
Score = 31.1 bits (67), Expect = 0.23
Identities = 27/101 (26%), Positives = 30/101 (29%)
Frame = +3
Query: 603 QDLPPXPXAFXPLATXPSXXPXLFPTPARXPXXPVPPLLPXRGTPWPXXPXPPXLGXVXS 782
Q PP P P+A + P PT A P P G P P P G +
Sbjct: 1879 QAAPPPPP---PMALPKAGPPSAAPTSALPPAGPPAGATAISGNPGMPAPV-PLTGKETA 1934
Query: 783 XFRXYRPXAPPXRPXXCPNPPXPXPPXPPPXPRXTHXXPPP 905
P APP PP P PPP
Sbjct: 1935 VPLSSMPNAPPSVASNAKLPPASNNRKVDPLEDILQAMPPP 1975
>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1420
Score = 30.7 bits (66), Expect = 0.30
Identities = 28/109 (25%), Positives = 34/109 (31%), Gaps = 1/109 (0%)
Frame = +3
Query: 582 PXWXKPEQDLPPXPXAFXPLATXPSXX-PXLFPTPARXPXXPVPPLLPXRGTPWPXXPXP 758
P P + P P P A P+ P + P P P PP + +
Sbjct: 156 PTVSAPNSMVSPPPSFQPPSAAAPATSLPSDYNPP---PPPPPPPAVEDQAADANEPDDY 212
Query: 759 PXLGXVXSXFRXYRPXAPPXRPXXCPNPPXPXPPXPPPXPRXTHXXPPP 905
G S P P + P PP P PP PP T P P
Sbjct: 213 YSSGRAVSP--EIPPTYTPKQADPLPAPPPPPPPTLPPQSTNTSQLPMP 259
>SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 587
Score = 30.3 bits (65), Expect = 0.39
Identities = 28/102 (27%), Positives = 30/102 (29%)
Frame = +3
Query: 582 PXWXKPEQDLPPXPXAFXPLATXPSXXPXLFPTPARXPXXPVPPLLPXRGTPWPXXPXPP 761
P W +P Q P P P P P P PP +P P P P P
Sbjct: 461 PPWQQPTQQSAVQPSNLVPSQNAPFIPGTSAPLP---PTTFAPPGVPL--PPIPGAPGMP 515
Query: 762 XLGXVXSXFRXYRPXAPPXRPXXCPNPPXPXPPXPPPXPRXT 887
L PP P P P P P P P T
Sbjct: 516 NLNMSQPPMVPPGMALPPGMP--APFPGYPAVPAMPGIPGAT 555
>SPBC83.01 |ucp8||UBA/EH/EF hand domain protein
Ucp8|Schizosaccharomyces pombe|chr 2|||Manual
Length = 884
Score = 29.1 bits (62), Expect = 0.91
Identities = 10/19 (52%), Positives = 10/19 (52%)
Frame = +3
Query: 849 PXPPXPPPXPRXTHXXPPP 905
P PP P P P H PPP
Sbjct: 729 PAPPTPAPTPAVKHHPPPP 747
Score = 25.8 bits (54), Expect = 8.5
Identities = 11/36 (30%), Positives = 12/36 (33%)
Frame = +3
Query: 798 RPXAPPXRPXXCPNPPXPXPPXPPPXPRXTHXXPPP 905
+P P P P P P PPP PP
Sbjct: 724 KPQVTPAPPTPAPTPAVKHHPPPPPVRSSISPSMPP 759
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 28.3 bits (60), Expect = 1.6
Identities = 11/23 (47%), Positives = 11/23 (47%)
Frame = +3
Query: 810 PPXRPXXCPNPPXPXPPXPPPXP 878
PP P P PP PP PP P
Sbjct: 5 PPGNPPPPPPPPGFEPPSQPPPP 27
Score = 26.2 bits (55), Expect = 6.4
Identities = 10/22 (45%), Positives = 10/22 (45%)
Frame = +3
Query: 840 PPXPXPPXPPPXPRXTHXXPPP 905
P P PP PPP PPP
Sbjct: 6 PGNPPPPPPPPGFEPPSQPPPP 27
Score = 25.8 bits (54), Expect = 8.5
Identities = 10/21 (47%), Positives = 10/21 (47%)
Frame = +3
Query: 810 PPXRPXXCPNPPXPXPPXPPP 872
PP P PP PP PPP
Sbjct: 10 PPPPPPPGFEPPSQPPPPPPP 30
>SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein
Sap49|Schizosaccharomyces pombe|chr 1|||Manual
Length = 335
Score = 28.3 bits (60), Expect = 1.6
Identities = 28/104 (26%), Positives = 33/104 (31%), Gaps = 1/104 (0%)
Frame = +3
Query: 597 PEQDLPPXPXAFXPLATXPSXXPXLFPTPARXPXXPVPPL-LPXRGTPWPXXPXPPXLGX 773
P+ LPP F P P+ T A PVP + L T P P L
Sbjct: 206 PQSTLPP---GFSPATPAPTSAANTPATIAATSIPPVPNVPLVGATTAVPPLSIPNVLPF 262
Query: 774 VXSXFRXYRPXAPPXRPXXCPNPPXPXPPXPPPXPRXTHXXPPP 905
+ + P P P P P PPP P P P
Sbjct: 263 TAAQ---HFPGMPAMPMMNVPMGPGGAPLVPPPPPGMVMASPSP 303
>SPAC26A3.16 |dph1|ucp5|UBA domain protein Dph1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 354
Score = 27.9 bits (59), Expect = 2.1
Identities = 14/23 (60%), Positives = 14/23 (60%), Gaps = 1/23 (4%)
Frame = -3
Query: 871 GGGXGGXGXGGL-GXXQGRXGGA 806
GGG GG G GGL G G GGA
Sbjct: 225 GGGLGGAGLGGLGGAGLGGFGGA 247
>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1224
Score = 27.9 bits (59), Expect = 2.1
Identities = 28/117 (23%), Positives = 33/117 (28%), Gaps = 4/117 (3%)
Frame = +3
Query: 531 HXLRPP*TSLTKIHAQXPXWXK--PEQDLPPXPXAFXPLATXPSXXPXLFPTPARXPXXP 704
H L PP TS T P + + P P S P + P
Sbjct: 849 HPLPPPSTSTTAGWNDAPMLGQLPMRRAAPSMAPVRSPFPGASSAQPAAMSRTSSVSTLP 908
Query: 705 VPPLLPXRGTPWPXX--PXPPXLGXVXSXFRXYRPXAPPXRPXXCPNPPXPXPPXPP 869
PP P P PP +G PP + PNP P P P
Sbjct: 909 PPPPTASMTASAPAIASPPPPKVGETYHPPTASGTRVPPVQQPSHPNPYTPVAPQSP 965
>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 273
Score = 27.1 bits (57), Expect = 3.7
Identities = 14/28 (50%), Positives = 14/28 (50%), Gaps = 2/28 (7%)
Frame = -3
Query: 877 G*GGGXGGXG--XGGLGXXQGRXGGAXG 800
G GGG GG G GG G G GG G
Sbjct: 239 GFGGGPGGFGGGLGGFGGGPGGFGGGPG 266
>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 500
Score = 26.6 bits (56), Expect = 4.9
Identities = 16/34 (47%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
Frame = -3
Query: 904 GGGXX*VXRG*GGGXGGXGXGGLGXXQGR-XGGA 806
GGG G GG G G GG G +GR GGA
Sbjct: 446 GGGSRGGRGGFGGRGGFGGRGGFGGGRGRGRGGA 479
>SPBC902.04 |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 589
Score = 26.6 bits (56), Expect = 4.9
Identities = 15/48 (31%), Positives = 18/48 (37%), Gaps = 2/48 (4%)
Frame = +3
Query: 621 PXAFXPLATXPSXXPXLFPTPARXPXXPVPPL--LPXRGTPWPXXPXP 758
P + P AT PS P P +PP+ LP P P P
Sbjct: 140 PPLYHPAATAPSEFMPSIPGFGNLPNPAMPPIPFLPFNPAAQPPFPPP 187
>SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 305
Score = 26.2 bits (55), Expect = 6.4
Identities = 13/26 (50%), Positives = 13/26 (50%)
Frame = -3
Query: 877 G*GGGXGGXGXGGLGXXQGRXGGAXG 800
G GG GG G G G G GGA G
Sbjct: 20 GFNGGRGGFGGGRGGARGGGRGGARG 45
Score = 25.8 bits (54), Expect = 8.5
Identities = 14/35 (40%), Positives = 14/35 (40%)
Frame = -3
Query: 901 GGXX*VXRG*GGGXGGXGXGGLGXXQGRXGGAXGR 797
GG G GG GG G G GR G GR
Sbjct: 23 GGRGGFGGGRGGARGGGRGGARGGRGGRGGARGGR 57
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,578,756
Number of Sequences: 5004
Number of extensions: 42719
Number of successful extensions: 276
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 109
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 191
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 460503700
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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