Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP13_F_I08
(904 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 33 0.073
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 32 0.13
SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr... 31 0.30
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 31 0.30
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ... 27 0.44
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 29 0.68
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 28 1.6
SPBC1734.11 |||DNAJ domain protein Mas5 |Schizosaccharomyces pom... 27 3.6
SPAC31G5.10 |eta2||Myb family transcriptional regulator Eta2|Sch... 27 3.6
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 27 4.8
SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex p... 26 8.4
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 32.7 bits (71), Expect = 0.073
Identities = 14/28 (50%), Positives = 14/28 (50%)
Frame = +2
Query: 626 PXXPPXPPPXXPPPXXXPRXPAXPPPXG 709
P PP PPP PP P P PPP G
Sbjct: 6 PGNPPPPPP--PPGFEPPSQPPPPPPPG 31
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 31.9 bits (69), Expect = 0.13
Identities = 12/22 (54%), Positives = 12/22 (54%)
Frame = +2
Query: 635 PPXPPPXXPPPXXXPRXPAXPP 700
PP PP PPP P PA PP
Sbjct: 1707 PPPPPMSVPPPPSAPPMPAGPP 1728
Score = 27.5 bits (58), Expect = 2.8
Identities = 13/30 (43%), Positives = 13/30 (43%), Gaps = 2/30 (6%)
Frame = +2
Query: 620 PXPXXPPX--PPPXXPPPXXXPRXPAXPPP 703
P P PP PPP PP A PPP
Sbjct: 1705 PTPPPPPMSVPPPPSAPPMPAGPPSAPPPP 1734
Score = 27.5 bits (58), Expect = 2.8
Identities = 11/29 (37%), Positives = 12/29 (41%)
Frame = +2
Query: 626 PXXPPXPPPXXPPPXXXPRXPAXPPPXGR 712
P P PP PPP P+ P P R
Sbjct: 1721 PPMPAGPPSAPPPPLPASSAPSVPNPGDR 1749
Score = 26.6 bits (56), Expect = 4.8
Identities = 11/28 (39%), Positives = 11/28 (39%)
Frame = +2
Query: 620 PXPXXPPXPPPXXPPPXXXPRXPAXPPP 703
P P P PP P P P P P P
Sbjct: 1709 PPPMSVPPPPSAPPMPAGPPSAPPPPLP 1736
>SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 305
Score = 30.7 bits (66), Expect = 0.30
Identities = 15/28 (53%), Positives = 15/28 (53%), Gaps = 1/28 (3%)
Frame = -2
Query: 699 GGXAGXRGXXXGG-GXXGGGXGGXXGXG 619
GG G RG GG G GGG GG G G
Sbjct: 12 GGSRGGRGGFNGGRGGFGGGRGGARGGG 39
Score = 29.1 bits (62), Expect = 0.90
Identities = 14/27 (51%), Positives = 14/27 (51%), Gaps = 1/27 (3%)
Frame = -2
Query: 702 GGGXAGXRGXXXGGGXXG-GGXGGXXG 625
GGG G RG GG G GG GG G
Sbjct: 29 GGGRGGARGGGRGGARGGRGGRGGARG 55
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 30.7 bits (66), Expect = 0.30
Identities = 14/42 (33%), Positives = 17/42 (40%), Gaps = 5/42 (11%)
Frame = +2
Query: 593 ILIXRXXXXPXPXXPPXP-----PPXXPPPXXXPRXPAXPPP 703
+++ P P PP P PP PPP P PPP
Sbjct: 739 VIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPP 780
Score = 26.6 bits (56), Expect = 4.8
Identities = 11/28 (39%), Positives = 11/28 (39%)
Frame = +2
Query: 620 PXPXXPPXPPPXXPPPXXXPRXPAXPPP 703
P P PPP PP P PPP
Sbjct: 754 PAPIMGGPPPPPPPPGVAGAGPPPPPPP 781
Score = 26.6 bits (56), Expect = 4.8
Identities = 11/28 (39%), Positives = 11/28 (39%)
Frame = +2
Query: 620 PXPXXPPXPPPXXPPPXXXPRXPAXPPP 703
P PP PPP P P PPP
Sbjct: 756 PIMGGPPPPPPPPGVAGAGPPPPPPPPP 783
Score = 26.2 bits (55), Expect = 6.4
Identities = 11/28 (39%), Positives = 11/28 (39%)
Frame = +2
Query: 626 PXXPPXPPPXXPPPXXXPRXPAXPPPXG 709
P P P P PP P PPP G
Sbjct: 742 PTPAPAPIPVPPPAPIMGGPPPPPPPPG 769
Score = 25.8 bits (54), Expect = 8.4
Identities = 15/50 (30%), Positives = 15/50 (30%)
Frame = +2
Query: 635 PPXPPPXXPPPXXXPRXPAXPPPXGRGXFXXXPXSXXHXFGXXXGXXPPP 784
PP PPP P P PPP P G PPP
Sbjct: 732 PPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPP 781
>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1420
Score = 27.1 bits (57), Expect(2) = 0.44
Identities = 9/15 (60%), Positives = 9/15 (60%)
Frame = +2
Query: 620 PXPXXPPXPPPXXPP 664
P P PP PPP PP
Sbjct: 234 PLPAPPPPPPPTLPP 248
Score = 21.4 bits (43), Expect(2) = 0.44
Identities = 11/46 (23%), Positives = 12/46 (26%)
Frame = +2
Query: 659 PPPXXXPRXPAXPPPXGRGXFXXXPXSXXHXFGXXXGXXPPPXXXG 796
PPP P P PP S H + P G
Sbjct: 273 PPPPATPSQPPRPPTNASTRSTGTSSSMAHSYDSPPSPSSPSDAYG 318
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 29.5 bits (63), Expect = 0.68
Identities = 13/30 (43%), Positives = 13/30 (43%), Gaps = 2/30 (6%)
Frame = +2
Query: 620 PXPXXPPXPPPXXPPPXXXPR--XPAXPPP 703
P PP PPP PP P P PPP
Sbjct: 1184 PAAGVPPVPPPSEAPPVPKPSVGVPPVPPP 1213
Score = 27.5 bits (58), Expect = 2.8
Identities = 16/57 (28%), Positives = 17/57 (29%), Gaps = 2/57 (3%)
Frame = +2
Query: 620 PXPXXPPXPPPXXPPPXXXPR--XPAXPPPXGRGXFXXXPXSXXHXFGXXXGXXPPP 784
P PP PPP PP P P P P + P S P P
Sbjct: 1203 PSVGVPPVPPPSTAPPVPTPSAGLPPVPVPTAKAPPVPAPSSEAPSVSTPRSSVPSP 1259
Score = 27.1 bits (57), Expect = 3.6
Identities = 12/32 (37%), Positives = 12/32 (37%)
Frame = +2
Query: 620 PXPXXPPXPPPXXPPPXXXPRXPAXPPPXGRG 715
P PP P P PP P A P P G
Sbjct: 1107 PSVAVPPVPAPSGAPPVPKPSVAAPPVPVPSG 1138
Score = 26.6 bits (56), Expect = 4.8
Identities = 12/32 (37%), Positives = 12/32 (37%)
Frame = +2
Query: 620 PXPXXPPXPPPXXPPPXXXPRXPAXPPPXGRG 715
P PP P P PP P A P P G
Sbjct: 1126 PSVAAPPVPVPSGAPPVPKPSVAAPPVPAPSG 1157
Score = 26.2 bits (55), Expect = 6.4
Identities = 11/28 (39%), Positives = 11/28 (39%)
Frame = +2
Query: 620 PXPXXPPXPPPXXPPPXXXPRXPAXPPP 703
P PP P P PP P A P P
Sbjct: 1145 PSVAAPPVPAPSGAPPVPKPSVAAPPVP 1172
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 28.3 bits (60), Expect = 1.6
Identities = 11/28 (39%), Positives = 12/28 (42%)
Frame = +2
Query: 620 PXPXXPPXPPPXXPPPXXXPRXPAXPPP 703
P PP P PP P P+ PPP
Sbjct: 125 PSAPAPPTPQSELRPPTSAPPRPSIPPP 152
>SPBC1734.11 |||DNAJ domain protein Mas5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 407
Score = 27.1 bits (57), Expect = 3.6
Identities = 18/49 (36%), Positives = 25/49 (51%)
Frame = +3
Query: 33 IP*DLIXVVPDSVLEPRFX*KNQNEFYENHIFLVRCCFRDRISETLEHL 179
IP D+I V+ D PRF + FYE H+ L+ +I +EHL
Sbjct: 237 IPGDVIFVI-DQKEHPRFKRSGDHLFYEAHVDLLTALAGGQI--VVEHL 282
>SPAC31G5.10 |eta2||Myb family transcriptional regulator
Eta2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 569
Score = 27.1 bits (57), Expect = 3.6
Identities = 13/33 (39%), Positives = 20/33 (60%)
Frame = -3
Query: 170 QGFADAVAKTTTNKKNMILVKFILIFLXKAGFE 72
QGF ++VA K+N +L K++ F AG+E
Sbjct: 203 QGFLESVASFLNRKENSLL-KYMRAFFQVAGYE 234
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 26.6 bits (56), Expect = 4.8
Identities = 12/27 (44%), Positives = 12/27 (44%), Gaps = 2/27 (7%)
Frame = +2
Query: 626 PXXPPXPPPXXPP--PXXXPRXPAXPP 700
P PP PP PP P P P PP
Sbjct: 425 PSAPPSLPPSAPPSLPMGAPAAPPLPP 451
Score = 26.2 bits (55), Expect = 6.4
Identities = 10/23 (43%), Positives = 10/23 (43%)
Frame = +2
Query: 635 PPXPPPXXPPPXXXPRXPAXPPP 703
PP P P PP P P PP
Sbjct: 415 PPVPTPPSLPPSAPPSLPPSAPP 437
Score = 26.2 bits (55), Expect = 6.4
Identities = 13/28 (46%), Positives = 13/28 (46%), Gaps = 3/28 (10%)
Frame = +2
Query: 626 PXXPPXPP--PXXPP-PXXXPRXPAXPP 700
P PP PP P PP P P P PP
Sbjct: 444 PAAPPLPPSAPIAPPLPAGMPAAPPLPP 471
>SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex
protein Gar1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 194
Score = 25.8 bits (54), Expect = 8.4
Identities = 13/26 (50%), Positives = 13/26 (50%)
Frame = -2
Query: 702 GGGXAGXRGXXXGGGXXGGGXGGXXG 625
GG G RG GGG GG GG G
Sbjct: 160 GGFGGGSRGGF-GGGSRGGSRGGFRG 184
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,629,495
Number of Sequences: 5004
Number of extensions: 47147
Number of successful extensions: 224
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 112
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 179
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 456499320
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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