Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP13_F_I04
         (894 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyc...    28   2.1  
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    27   4.8  

>SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 503

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 17/69 (24%), Positives = 32/69 (46%)
 Frame = +2

Query: 80  PLVSQRPPLNLHKLTMNFAKILSFVFALVLALRMTSAAPEPRWKIFKKIEKMGRNIRDGI 259
           PL+   PP N+   + +     +  FAL +  R+ ++ P+P+        ++ R I D +
Sbjct: 146 PLLLSNPPRNMIGQSQSGTGKTA-AFALTMLSRVDASVPKPQAICLAPSRELARQIMDVV 204

Query: 260 VKAGPAIEV 286
            + G   EV
Sbjct: 205 TEMGKYTEV 213


>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 28/89 (31%), Positives = 28/89 (31%), Gaps = 3/89 (3%)
 Frame = -2

Query: 881 GGGFXXXGGXXXXPPP-PGXXKK-KXXGXXXXXXXFXGGFXGXPKXPKGAXXFXPKKXRF 708
           GGGF   GG    PPP PG        G         GGF G P    G     P     
Sbjct: 187 GGGFGGFGGGSGGPPPGPGGFGGFGGFGGEGHHHGGHGGFGGGP----GGFEGGPGGFGG 242

Query: 707 FXGXFXXG-GXXQXXPKGFXXXXGXXXPP 624
             G F  G G     P GF    G    P
Sbjct: 243 GPGGFGGGLGGFGGGPGGFGGGPGGHGGP 271


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,645,328
Number of Sequences: 5004
Number of extensions: 41961
Number of successful extensions: 87
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 75
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 84
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 450492750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)