Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP13_F_I04
         (894 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_0977 + 21381857-21383757,21384299-21384458,21384669-213847...    29   3.8  
03_02_0786 - 11169820-11170158,11170245-11170433,11171173-111714...    29   3.8  
01_01_0553 - 4067921-4068180,4068437-4068455,4069101-4070225           29   3.8  
05_06_0282 + 26915249-26915881                                         29   5.0  
11_04_0009 - 12132781-12133272                                         28   8.7  

>04_03_0977 +
           21381857-21383757,21384299-21384458,21384669-21384717,
           21385117-21385169
          Length = 720

 Score = 29.5 bits (63), Expect = 3.8
 Identities = 12/23 (52%), Positives = 12/23 (52%)
 Frame = +2

Query: 824 RXXGXGGXXXLPPXXXNPPPPXG 892
           R  G GG   LPP    PPPP G
Sbjct: 90  RGVGGGGWVQLPPPPPPPPPPQG 112


>03_02_0786 -
           11169820-11170158,11170245-11170433,11171173-11171469,
           11171568-11171630,11171884-11171997,11173011-11173091,
           11173176-11173307,11174265-11174363,11174453-11174530,
           11174641-11174901
          Length = 550

 Score = 29.5 bits (63), Expect = 3.8
 Identities = 12/36 (33%), Positives = 13/36 (36%)
 Frame = +2

Query: 641 PXXXKXPLXXFGXPPPPXXPRXKXXFFXGXXGXPPW 748
           P     P    G PPPP  P     +  G    PPW
Sbjct: 24  PGFPVAPPPPMGPPPPPPMPPVPVMYLRGVPPPPPW 59


>01_01_0553 - 4067921-4068180,4068437-4068455,4069101-4070225
          Length = 467

 Score = 29.5 bits (63), Expect = 3.8
 Identities = 11/19 (57%), Positives = 11/19 (57%)
 Frame = +1

Query: 832 GGGGXXXXPPXXXKPPPPP 888
           GGGG     P   KPPPPP
Sbjct: 22  GGGGGGGFSPTAAKPPPPP 40


>05_06_0282 + 26915249-26915881
          Length = 210

 Score = 29.1 bits (62), Expect = 5.0
 Identities = 11/20 (55%), Positives = 11/20 (55%)
 Frame = +1

Query: 832 GGGGXXXXPPXXXKPPPPPG 891
           GGGG    PP    PPP PG
Sbjct: 77  GGGGVLRRPPGRGPPPPGPG 96


>11_04_0009 - 12132781-12133272
          Length = 163

 Score = 28.3 bits (60), Expect = 8.7
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = -2

Query: 215 RSSTWAREQRWSFSKPAPERRRRIGSLR 132
           R   W RE+R S  +  P +RRR+G  R
Sbjct: 108 RGEAWRRERRDSKIESRPSQRRRVGGRR 135


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,325,983
Number of Sequences: 37544
Number of extensions: 426193
Number of successful extensions: 1604
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1034
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1461
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2518669100
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)