Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP13_F_I04
         (894 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U53148-3|AAB37077.1|  282|Caenorhabditis elegans Ground-like (gr...    29   3.4  
AF098986-1|AAC67425.1|  747|Caenorhabditis elegans T box family ...    29   5.9  
Z46676-8|CAB60993.2|  388|Caenorhabditis elegans Hypothetical pr...    28   7.8  
U24189-3|AAC47514.1|  398|Caenorhabditis elegans RRM-type RNA bi...    28   7.8  

>U53148-3|AAB37077.1|  282|Caenorhabditis elegans Ground-like (grd
           related) protein10 protein.
          Length = 282

 Score = 29.5 bits (63), Expect = 3.4
 Identities = 12/25 (48%), Positives = 12/25 (48%)
 Frame = +1

Query: 814 FFXXXPGGGGXXXXPPXXXKPPPPP 888
           FF    GGGG     P    PPPPP
Sbjct: 22  FFFGAAGGGGACGCAPRPACPPPPP 46



 Score = 28.7 bits (61), Expect = 5.9
 Identities = 12/27 (44%), Positives = 12/27 (44%)
 Frame = +1

Query: 811 FFFXXXPGGGGXXXXPPXXXKPPPPPG 891
           FFF    GGG     P     PPPP G
Sbjct: 22  FFFGAAGGGGACGCAPRPACPPPPPSG 48


>AF098986-1|AAC67425.1|  747|Caenorhabditis elegans T box family
           protein 31 protein.
          Length = 747

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 15/42 (35%), Positives = 21/42 (50%)
 Frame = -1

Query: 378 YILKLTSRLNNTSIYGARFKYHFPIALAEPRTSIAGPALTMP 253
           ++L L+  L   S Y    K HFP       TS+ GPA+ +P
Sbjct: 612 HLLNLSHHLCRFSEYNLFVKAHFPRGSYGSLTSMTGPAVEIP 653


>Z46676-8|CAB60993.2|  388|Caenorhabditis elegans Hypothetical
           protein C08B11.5 protein.
          Length = 388

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 15/49 (30%), Positives = 16/49 (32%)
 Frame = +1

Query: 742 PLGFXGXPXNPPXKXXXXXXXPXFFFXXXPGGGGXXXXPPXXXKPPPPP 888
           P G  G P  PP         P       P  G     PP   +PP PP
Sbjct: 327 PPGMGGMPPPPPPGMRYPGGMPPPPPPRYPSAGPGMYPPPPPSRPPAPP 375


>U24189-3|AAC47514.1|  398|Caenorhabditis elegans RRM-type RNA
           binding protein protein.
          Length = 398

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 15/49 (30%), Positives = 16/49 (32%)
 Frame = +1

Query: 742 PLGFXGXPXNPPXKXXXXXXXPXFFFXXXPGGGGXXXXPPXXXKPPPPP 888
           P G  G P  PP         P       P  G     PP   +PP PP
Sbjct: 337 PPGMGGMPPPPPPGMRYPGGMPPPPPPRYPSAGPGMYPPPPPSRPPAPP 385


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,236,403
Number of Sequences: 27780
Number of extensions: 321234
Number of successful extensions: 1128
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 677
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 982
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2265843888
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)