Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP13_F_I01
(1090 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 32 0.16
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 31 0.37
SPBC660.05 |||conserved fungal protein|Schizosaccharomyces pombe... 30 0.49
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 30 0.65
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 27 3.5
SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr... 27 3.5
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 27 3.5
SPBC83.01 |ucp8||UBA/EH/EF hand domain protein Ucp8|Schizosaccha... 27 6.1
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 31.9 bits (69), Expect = 0.16
Identities = 14/35 (40%), Positives = 14/35 (40%)
Frame = +3
Query: 111 PXPXSXPPPXLPPPPXKXXXKXPPXGPXPPXPXRG 215
P P PP PPPP PP P PP G
Sbjct: 754 PAPIMGGPPPPPPPPGVAGAGPPPPPPPPPAVSAG 788
Score = 29.5 bits (63), Expect = 0.86
Identities = 10/16 (62%), Positives = 10/16 (62%)
Frame = +1
Query: 1039 PPPXPXXPXPPPPSPP 1086
PPP P PPPP PP
Sbjct: 752 PPPAPIMGGPPPPPPP 767
Score = 28.3 bits (60), Expect = 2.0
Identities = 14/40 (35%), Positives = 15/40 (37%), Gaps = 3/40 (7%)
Frame = +1
Query: 112 PXPXPX---PPPPSPXXXXXXXXXXPPXDPXPXPXXGGXK 222
P P P PPPP P PP P P GG +
Sbjct: 752 PPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPPAVSAGGSR 791
Score = 26.6 bits (56), Expect = 6.1
Identities = 15/44 (34%), Positives = 15/44 (34%), Gaps = 7/44 (15%)
Frame = +3
Query: 96 PXFFFPXPXSXPPPXLPPPPXKXXXKXPP-------XGPXPPXP 206
P P P P P PP P PP GP PP P
Sbjct: 737 PAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPP 780
Score = 26.2 bits (55), Expect = 8.0
Identities = 11/20 (55%), Positives = 11/20 (55%), Gaps = 4/20 (20%)
Frame = +1
Query: 1039 PPPXPX----XPXPPPPSPP 1086
PPP P P PPPP PP
Sbjct: 764 PPPPPGVAGAGPPPPPPPPP 783
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 30.7 bits (66), Expect = 0.37
Identities = 12/25 (48%), Positives = 12/25 (48%)
Frame = +3
Query: 132 PPXLPPPPXKXXXKXPPXGPXPPXP 206
PP PPPP PP P PP P
Sbjct: 5 PPGNPPPPPPPPGFEPPSQPPPPPP 29
Score = 29.5 bits (63), Expect = 0.86
Identities = 12/28 (42%), Positives = 13/28 (46%)
Frame = +3
Query: 123 SXPPPXLPPPPXKXXXKXPPXGPXPPXP 206
S PP PPPP + P P PP P
Sbjct: 3 SLPPGNPPPPPPPPGFEPPSQPPPPPPP 30
Score = 27.9 bits (59), Expect = 2.6
Identities = 12/28 (42%), Positives = 14/28 (50%)
Frame = +3
Query: 117 PXSXPPPXLPPPPXKXXXKXPPXGPXPP 200
P PPP PPP + + PP P PP
Sbjct: 5 PPGNPPPPPPPPGFEPPSQPPP--PPPP 30
>SPBC660.05 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 143
Score = 30.3 bits (65), Expect = 0.49
Identities = 16/41 (39%), Positives = 18/41 (43%)
Frame = -1
Query: 226 PXXXPRXGXGGXGPXGGXXXXXXXGGGGRXGGGXEXGXGKK 104
P PR G G GP G GGGR GG G G++
Sbjct: 105 PLFGPRIGGGHHGPLHGPHGGFGGRGGGRMGG--RGGRGRR 143
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 29.9 bits (64), Expect = 0.65
Identities = 14/32 (43%), Positives = 14/32 (43%)
Frame = +3
Query: 111 PXPXSXPPPXLPPPPXKXXXKXPPXGPXPPXP 206
P P S PPP PP PP P PP P
Sbjct: 1709 PPPMSVPPPPSAPP----MPAGPPSAPPPPLP 1736
Score = 27.1 bits (57), Expect = 4.6
Identities = 9/16 (56%), Positives = 10/16 (62%)
Frame = +1
Query: 1039 PPPXPXXPXPPPPSPP 1086
PPP P PPP +PP
Sbjct: 1707 PPPPPMSVPPPPSAPP 1722
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 27.5 bits (58), Expect = 3.5
Identities = 13/35 (37%), Positives = 14/35 (40%), Gaps = 1/35 (2%)
Frame = +3
Query: 111 PXPXSXPPPXLPPPPXKXXXKXPP-XGPXPPXPXR 212
P P S PPP P P K P PP P +
Sbjct: 166 PIPSSLPPPAQPAAPVKSPPSAPSLPSAVPPMPPK 200
>SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 305
Score = 27.5 bits (58), Expect = 3.5
Identities = 11/15 (73%), Positives = 11/15 (73%)
Frame = -2
Query: 1086 RGGGGGGXGXXRGGG 1042
RGG GGG G RGGG
Sbjct: 25 RGGFGGGRGGARGGG 39
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 27.5 bits (58), Expect = 3.5
Identities = 16/41 (39%), Positives = 17/41 (41%), Gaps = 8/41 (19%)
Frame = +3
Query: 129 PPPXLPPPPXKXXXKXPPXG--------PXPPXPXRGXXXG 227
PPP PPPP + PP G P PP P R G
Sbjct: 311 PPP--PPPPSRRNRGKPPIGNGSSNSSLPPPPPPPRSNAAG 349
>SPBC83.01 |ucp8||UBA/EH/EF hand domain protein
Ucp8|Schizosaccharomyces pombe|chr 2|||Manual
Length = 884
Score = 26.6 bits (56), Expect = 6.1
Identities = 10/19 (52%), Positives = 10/19 (52%)
Frame = +2
Query: 593 PAPPXGXPRPPXXGXPPPP 649
PAPP P P PPPP
Sbjct: 729 PAPPTPAPTPAVKHHPPPP 747
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,411,393
Number of Sequences: 5004
Number of extensions: 23255
Number of successful extensions: 346
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 58
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 238
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 573748416
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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