Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP13_F_H24
         (1023 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    35   0.021
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    34   0.028
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    29   1.4  
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    29   1.4  
SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr...    29   1.4  
SPAC26A3.16 |dph1|ucp5|UBA domain protein Dph1|Schizosaccharomyc...    28   2.4  
SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex p...    28   2.4  
SPBC1347.05c |||DNAJ domain protein Scj1|Schizosaccharomyces pom...    26   9.8  
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    26   9.8  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    26   9.8  

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 34.7 bits (76), Expect = 0.021
 Identities = 14/23 (60%), Positives = 14/23 (60%), Gaps = 3/23 (13%)
 Frame = +1

Query: 469 PXPPPXPPXX---GPPXPPPPXP 528
           P PPP PP     GPP PPPP P
Sbjct: 761 PPPPPPPPGVAGAGPPPPPPPPP 783



 Score = 34.3 bits (75), Expect = 0.028
 Identities = 12/18 (66%), Positives = 12/18 (66%)
 Frame = +1

Query: 469 PXPPPXPPXXGPPXPPPP 522
           P PPP P   GPP PPPP
Sbjct: 750 PVPPPAPIMGGPPPPPPP 767



 Score = 27.9 bits (59), Expect = 2.4
 Identities = 11/22 (50%), Positives = 11/22 (50%)
 Frame = +2

Query: 185 PPPXPXXPPPPAPRXPXXPXPP 250
           P P P   PPPAP     P PP
Sbjct: 744 PAPAPIPVPPPAPIMGGPPPPP 765



 Score = 26.6 bits (56), Expect = 5.6
 Identities = 10/22 (45%), Positives = 10/22 (45%)
 Frame = +2

Query: 185 PPPXPXXPPPPAPRXPXXPXPP 250
           P P P  PP P    P  P PP
Sbjct: 746 PAPIPVPPPAPIMGGPPPPPPP 767


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 34.3 bits (75), Expect = 0.028
 Identities = 12/20 (60%), Positives = 12/20 (60%)
 Frame = +1

Query: 469 PXPPPXPPXXGPPXPPPPXP 528
           P PPP PP   PP  PPP P
Sbjct: 9   PPPPPPPPGFEPPSQPPPPP 28



 Score = 29.1 bits (62), Expect = 1.1
 Identities = 12/21 (57%), Positives = 12/21 (57%), Gaps = 3/21 (14%)
 Frame = +1

Query: 469 PXPPPXP---PXXGPPXPPPP 522
           P PPP P   P   PP PPPP
Sbjct: 10  PPPPPPPGFEPPSQPPPPPPP 30



 Score = 26.6 bits (56), Expect = 5.6
 Identities = 12/26 (46%), Positives = 12/26 (46%), Gaps = 4/26 (15%)
 Frame = +2

Query: 185 PPPXPXXPPPP----APRXPXXPXPP 250
           PP  P  PPPP     P  P  P PP
Sbjct: 5   PPGNPPPPPPPPGFEPPSQPPPPPPP 30



 Score = 26.2 bits (55), Expect = 7.4
 Identities = 10/25 (40%), Positives = 10/25 (40%)
 Frame = +2

Query: 167 PXRDXXPPPXPXXPPPPAPRXPXXP 241
           P     PPP P   PP  P  P  P
Sbjct: 6   PGNPPPPPPPPGFEPPSQPPPPPPP 30



 Score = 22.6 bits (46), Expect(2) = 6.2
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = +1

Query: 262 PPPXPXPPPP 291
           PP  P PPPP
Sbjct: 20  PPSQPPPPPP 29



 Score = 21.8 bits (44), Expect(2) = 6.2
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = +1

Query: 256 PXPPPXPXPPP 288
           P  PP P PPP
Sbjct: 6   PGNPPPPPPPP 16


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 28.7 bits (61), Expect = 1.4
 Identities = 13/22 (59%), Positives = 13/22 (59%), Gaps = 2/22 (9%)
 Frame = +1

Query: 469  PXPPPXPP-XXGPP-XPPPPXP 528
            P PP  PP   GPP  PPPP P
Sbjct: 1715 PPPPSAPPMPAGPPSAPPPPLP 1736



 Score = 27.5 bits (58), Expect = 3.2
 Identities = 10/20 (50%), Positives = 10/20 (50%)
 Frame = +1

Query: 469  PXPPPXPPXXGPPXPPPPXP 528
            P PPP P    PP   PP P
Sbjct: 1705 PTPPPPPMSVPPPPSAPPMP 1724



 Score = 27.1 bits (57), Expect = 4.3
 Identities = 10/22 (45%), Positives = 10/22 (45%)
 Frame = +2

Query: 185  PPPXPXXPPPPAPRXPXXPXPP 250
            PPP P   PPP    P    PP
Sbjct: 1707 PPPPPMSVPPPPSAPPMPAGPP 1728


>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 28.7 bits (61), Expect = 1.4
 Identities = 13/25 (52%), Positives = 13/25 (52%)
 Frame = -3

Query: 235 GGXXGGRGGGXXGXGGGXXVAXGXG 161
           GG  GG GGG  G GGG     G G
Sbjct: 248 GGGLGGFGGGPGGFGGGPGGHGGPG 272



 Score = 27.5 bits (58), Expect = 3.2
 Identities = 11/17 (64%), Positives = 11/17 (64%)
 Frame = -3

Query: 235 GGXXGGRGGGXXGXGGG 185
           GG  GG GGG  G GGG
Sbjct: 241 GGGPGGFGGGLGGFGGG 257



 Score = 26.2 bits (55), Expect = 7.4
 Identities = 12/28 (42%), Positives = 12/28 (42%)
 Frame = -1

Query: 249 GGXGXXGXRGAGGGGXXGXGGGXXSRXG 166
           G  G  G  G  GGG  G GGG     G
Sbjct: 243 GPGGFGGGLGGFGGGPGGFGGGPGGHGG 270



 Score = 25.8 bits (54), Expect = 9.8
 Identities = 13/25 (52%), Positives = 13/25 (52%), Gaps = 1/25 (4%)
 Frame = -2

Query: 539 GXXXGXGGGGXGGPXXGGXG-GGXG 468
           G   G  GGG GGP  G  G GG G
Sbjct: 187 GGGFGGFGGGSGGPPPGPGGFGGFG 211


>SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 305

 Score = 28.7 bits (61), Expect = 1.4
 Identities = 14/27 (51%), Positives = 14/27 (51%), Gaps = 2/27 (7%)
 Frame = -2

Query: 542 GGXXXGXGG--GGXGGPXXGGXGGGXG 468
           GG   G GG  GG GG   GG GG  G
Sbjct: 19  GGFNGGRGGFGGGRGGARGGGRGGARG 45



 Score = 28.3 bits (60), Expect = 1.8
 Identities = 15/28 (53%), Positives = 15/28 (53%), Gaps = 3/28 (10%)
 Frame = -3

Query: 235 GGXXGGRGG---GXXGXGGGXXVAXGXG 161
           GG  GGRGG   G  G GGG   A G G
Sbjct: 12  GGSRGGRGGFNGGRGGFGGGRGGARGGG 39



 Score = 26.6 bits (56), Expect = 5.6
 Identities = 12/28 (42%), Positives = 12/28 (42%)
 Frame = -1

Query: 249 GGXGXXGXRGAGGGGXXGXGGGXXSRXG 166
           G  G  G RG  GG   G GG    R G
Sbjct: 39  GRGGARGGRGGRGGARGGRGGSSGGRGG 66



 Score = 26.2 bits (55), Expect = 7.4
 Identities = 12/28 (42%), Positives = 12/28 (42%)
 Frame = -1

Query: 249 GGXGXXGXRGAGGGGXXGXGGGXXSRXG 166
           G  G  G RG   GG  G GGG     G
Sbjct: 10  GRGGSRGGRGGFNGGRGGFGGGRGGARG 37


>SPAC26A3.16 |dph1|ucp5|UBA domain protein Dph1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 354

 Score = 27.9 bits (59), Expect = 2.4
 Identities = 12/28 (42%), Positives = 13/28 (46%)
 Frame = -1

Query: 249 GGXGXXGXRGAGGGGXXGXGGGXXSRXG 166
           GG G  G  G GG G  G GG   +  G
Sbjct: 226 GGLGGAGLGGLGGAGLGGFGGANNATAG 253


>SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex
           protein Gar1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 194

 Score = 27.9 bits (59), Expect = 2.4
 Identities = 12/25 (48%), Positives = 12/25 (48%)
 Frame = -3

Query: 235 GGXXGGRGGGXXGXGGGXXVAXGXG 161
           GG  GGRGG   G GG      G G
Sbjct: 141 GGFRGGRGGSRGGFGGNSRGGFGGG 165



 Score = 27.9 bits (59), Expect = 2.4
 Identities = 12/25 (48%), Positives = 12/25 (48%)
 Frame = -2

Query: 542 GGXXXGXGGGGXGGPXXGGXGGGXG 468
           GG   G GGG  GG   G  GG  G
Sbjct: 164 GGSRGGFGGGSRGGSRGGFRGGSRG 188



 Score = 26.6 bits (56), Expect = 5.6
 Identities = 14/28 (50%), Positives = 14/28 (50%)
 Frame = -1

Query: 249 GGXGXXGXRGAGGGGXXGXGGGXXSRXG 166
           GG G     G GGG   G GGG  SR G
Sbjct: 152 GGFGGNSRGGFGGGSRGGFGGG--SRGG 177


>SPBC1347.05c |||DNAJ domain protein Scj1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 381

 Score = 25.8 bits (54), Expect = 9.8
 Identities = 11/20 (55%), Positives = 11/20 (55%)
 Frame = -2

Query: 527 GXGGGGXGGPXXGGXGGGXG 468
           G  GG  GGP  G  GGG G
Sbjct: 78  GQPGGPGGGPGEGFPGGGFG 97


>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 309

 Score = 25.8 bits (54), Expect = 9.8
 Identities = 10/25 (40%), Positives = 11/25 (44%)
 Frame = +2

Query: 167 PXRDXXPPPXPXXPPPPAPRXPXXP 241
           P R   PPP P   PP   + P  P
Sbjct: 144 PPRPSIPPPSPASAPPIPSKAPPIP 168


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 25.8 bits (54), Expect = 9.8
 Identities = 11/28 (39%), Positives = 11/28 (39%)
 Frame = +2

Query: 167 PXRDXXPPPXPXXPPPPAPRXPXXPXPP 250
           P     PP  P  PP PA      P PP
Sbjct: 444 PAAPPLPPSAPIAPPLPAGMPAAPPLPP 471


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 845,287
Number of Sequences: 5004
Number of extensions: 11179
Number of successful extensions: 390
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 48
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 289
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 533248662
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)