Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP13_F_H24
         (1023 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    26   0.63 
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       26   0.63 
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              24   1.9  
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    23   3.4  

>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 25.8 bits (54), Expect = 0.63
 Identities = 8/12 (66%), Positives = 9/12 (75%)
 Frame = +1

Query: 265 PPXPXPPPPXPA 300
           PP P PPPP P+
Sbjct: 338 PPKPAPPPPPPS 349



 Score = 23.8 bits (49), Expect = 2.5
 Identities = 8/14 (57%), Positives = 8/14 (57%)
 Frame = +2

Query: 176 DXXPPPXPXXPPPP 217
           D   PP P  PPPP
Sbjct: 334 DSDTPPKPAPPPPP 347



 Score = 22.6 bits (46), Expect = 5.9
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = +2

Query: 488 PPXXGPPXPPP 520
           PP   PP PPP
Sbjct: 338 PPKPAPPPPPP 348



 Score = 22.6 bits (46), Expect = 5.9
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = +1

Query: 262 PPPXPXPPPP 291
           P P P PPPP
Sbjct: 339 PKPAPPPPPP 348


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 25.8 bits (54), Expect = 0.63
 Identities = 9/17 (52%), Positives = 9/17 (52%)
 Frame = +1

Query: 469 PXPPPXPPXXGPPXPPP 519
           P P   PP  GPP  PP
Sbjct: 40  PNPSQGPPPGGPPGAPP 56


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 24.2 bits (50), Expect = 1.9
 Identities = 8/13 (61%), Positives = 8/13 (61%)
 Frame = +1

Query: 490  PXXGPPXPPPPXP 528
            P  G P PPPP P
Sbjct: 1852 PVSGSPEPPPPPP 1864


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 23.4 bits (48), Expect = 3.4
 Identities = 12/26 (46%), Positives = 12/26 (46%), Gaps = 1/26 (3%)
 Frame = -2

Query: 542 GGXXXGXGGGGXG-GPXXGGXGGGXG 468
           GG   G  GG    G   GG GGG G
Sbjct: 28  GGVVTGASGGSIVVGANNGGGGGGLG 53


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 87,634
Number of Sequences: 438
Number of extensions: 3514
Number of successful extensions: 23
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 34104798
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)