Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP13_F_H23
         (782 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr 2...    27   0.021
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    29   0.75 
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    29   0.75 
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    29   0.99 
SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein Cap1|S...    29   0.99 
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    28   1.3  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    28   1.7  
SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces...    27   3.0  
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1...    27   4.0  

>SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1217

 Score = 27.1 bits (57), Expect(2) = 0.021
 Identities = 9/13 (69%), Positives = 9/13 (69%)
 Frame = +1

Query: 586  KKXXXPPPPPPPP 624
            K    PPPPPPPP
Sbjct: 1090 KPSAVPPPPPPPP 1102



 Score = 25.8 bits (54), Expect(2) = 0.021
 Identities = 9/14 (64%), Positives = 9/14 (64%)
 Frame = +1

Query: 604  PPPPPPPXXXXXKK 645
            PPPPPPP     KK
Sbjct: 1095 PPPPPPPPAEVEKK 1108



 Score = 24.2 bits (50), Expect(2) = 0.63
 Identities = 8/13 (61%), Positives = 8/13 (61%)
 Frame = +1

Query: 583  KKKXXXPPPPPPP 621
            K     PPPPPPP
Sbjct: 1090 KPSAVPPPPPPPP 1102



 Score = 23.4 bits (48), Expect(2) = 0.63
 Identities = 8/14 (57%), Positives = 9/14 (64%)
 Frame = +1

Query: 607  PPPPPPXXXXXKKK 648
            PPPPPP     +KK
Sbjct: 1095 PPPPPPPPAEVEKK 1108


>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 29.1 bits (62), Expect = 0.75
 Identities = 13/31 (41%), Positives = 13/31 (41%), Gaps = 3/31 (9%)
 Frame = +1

Query: 541 PPP---PPXXXXXXXKKKKKXXXPPPPPPPP 624
           PPP   PP               PPPPPPPP
Sbjct: 167 PPPSFQPPSAAAPATSLPSDYNPPPPPPPPP 197


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 29.1 bits (62), Expect = 0.75
 Identities = 13/28 (46%), Positives = 13/28 (46%)
 Frame = +1

Query: 541 PPPPPXXXXXXXKKKKKXXXPPPPPPPP 624
           PPPPP               PPPPPPPP
Sbjct: 761 PPPPPPPPGVAGA-----GPPPPPPPPP 783



 Score = 26.2 bits (55), Expect = 5.3
 Identities = 13/34 (38%), Positives = 13/34 (38%), Gaps = 6/34 (17%)
 Frame = +1

Query: 541 PPPPPXXXXXXXKKKKKXXXPPP------PPPPP 624
           PPPPP               PPP      PPPPP
Sbjct: 732 PPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPP 765



 Score = 25.4 bits (53), Expect = 9.3
 Identities = 16/65 (24%), Positives = 21/65 (32%)
 Frame = +1

Query: 577 KKKKKXXXPPPPPPPPXXXXXKKKKKXXPFXXPXKKKKXXXXPXXXXFLXXXGXXXKKXP 756
           ++++K     PPPPPP            P   P         P     +   G      P
Sbjct: 722 EEQQKLLLKSPPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAG---PPPP 778

Query: 757 XPPPP 771
            PPPP
Sbjct: 779 PPPPP 783


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 28.7 bits (61), Expect = 0.99
 Identities = 11/28 (39%), Positives = 11/28 (39%)
 Frame = +1

Query: 541  PPPPPXXXXXXXKKKKKXXXPPPPPPPP 624
            PPPPP               PP  PPPP
Sbjct: 1707 PPPPPMSVPPPPSAPPMPAGPPSAPPPP 1734


>SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein
           Cap1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 551

 Score = 28.7 bits (61), Expect = 0.99
 Identities = 10/21 (47%), Positives = 11/21 (52%)
 Frame = +1

Query: 601 PPPPPPPPXXXXXKKKKKXXP 663
           PPPPPPPP     K   +  P
Sbjct: 307 PPPPPPPPSNDFWKDSNEPAP 327



 Score = 26.6 bits (56), Expect = 4.0
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = +1

Query: 601 PPPPPPPP 624
           PPPPPPPP
Sbjct: 306 PPPPPPPP 313


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 15/41 (36%), Positives = 16/41 (39%)
 Frame = +1

Query: 541 PPPPPXXXXXXXKKKKKXXXPPPPPPPPXXXXXKKKKKXXP 663
           PPPPP               P  PPPPP     KK+K   P
Sbjct: 9   PPPPPPPPGFEP--------PSQPPPPPPPGYVKKRKNKTP 41



 Score = 27.1 bits (57), Expect = 3.0
 Identities = 11/29 (37%), Positives = 13/29 (44%)
 Frame = +1

Query: 601 PPPPPPPPXXXXXKKKKKXXPFXXPXKKK 687
           PPPPPPPP      +     P     K+K
Sbjct: 9   PPPPPPPPGFEPPSQPPPPPPPGYVKKRK 37



 Score = 25.8 bits (54), Expect = 7.0
 Identities = 15/41 (36%), Positives = 17/41 (41%)
 Frame = +3

Query: 540 PPPPPPXXXXXXXKKKKXXXXPPPXXPPXXXXXXKKKKKXP 662
           PPPPPP        +      PPP  PP      K+K K P
Sbjct: 9   PPPPPPPPGFEPPSQ------PPP--PPPPGYVKKRKNKTP 41



 Score = 25.8 bits (54), Expect = 7.0
 Identities = 11/29 (37%), Positives = 13/29 (44%)
 Frame = +1

Query: 604 PPPPPPPXXXXXKKKKKXXPFXXPXKKKK 690
           PPPPPPP       +    P     KK+K
Sbjct: 9   PPPPPPPPGFEPPSQPPPPPPPGYVKKRK 37


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 11/27 (40%), Positives = 11/27 (40%)
 Frame = +1

Query: 541 PPPPPXXXXXXXKKKKKXXXPPPPPPP 621
           P PPP               PPPPPPP
Sbjct: 291 PLPPPSSRVSAAALAANKKRPPPPPPP 317



 Score = 27.9 bits (59), Expect = 1.7
 Identities = 13/32 (40%), Positives = 13/32 (40%), Gaps = 5/32 (15%)
 Frame = +1

Query: 541 PPPPPXXXXXXXKK-----KKKXXXPPPPPPP 621
           PPPPP       K            PPPPPPP
Sbjct: 312 PPPPPPSRRNRGKPPIGNGSSNSSLPPPPPPP 343



 Score = 27.1 bits (57), Expect = 3.0
 Identities = 17/77 (22%), Positives = 18/77 (23%)
 Frame = +1

Query: 394 PPXXXFFFKKXXXPPPPXGGGGXPXXXXGGXKKXFFXXKKKXXXXXXXXPPPPPXXXXXX 573
           PP           PP P    G          +                PP PP      
Sbjct: 241 PPERVPSLSAPAPPPIPPPSNGTVSSPPNSPPRPIAPVSMNPAINSTSKPPLPPPSSRVS 300

Query: 574 XKKKKKXXXPPPPPPPP 624
                     PPPPPPP
Sbjct: 301 AAALAANKKRPPPPPPP 317



 Score = 27.1 bits (57), Expect = 3.0
 Identities = 11/28 (39%), Positives = 11/28 (39%)
 Frame = +1

Query: 541 PPPPPXXXXXXXKKKKKXXXPPPPPPPP 624
           PPPPP                 PPPPPP
Sbjct: 339 PPPPPRSNAAGSIPLPPQGRSAPPPPPP 366


>SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 713

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 9/18 (50%), Positives = 10/18 (55%)
 Frame = +1

Query: 601 PPPPPPPPXXXXXKKKKK 654
           PPPPPPPP       K +
Sbjct: 370 PPPPPPPPELLNHSPKSR 387


>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1841

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = +1

Query: 601 PPPPPPPP 624
           PPPPPPPP
Sbjct: 945 PPPPPPPP 952



 Score = 26.6 bits (56), Expect = 4.0
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = +1

Query: 601 PPPPPPPP 624
           PPPPPPPP
Sbjct: 946 PPPPPPPP 953


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,111,225
Number of Sequences: 5004
Number of extensions: 35589
Number of successful extensions: 197
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 119
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 379359666
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)