Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP13_F_H20
         (1047 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    36   0.013
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    35   0.017
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    31   0.36 
SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc...    29   1.1  
SPAC26A3.08 |smb1|smb|Sm snRNP core protein Smb1|Schizosaccharom...    29   1.4  
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    28   2.5  
SPBC557.04 |ppk29||Ark1/Prk1 family protein kinase Ppk29|Schizos...    25   2.6  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    27   5.8  
SPAP32A8.03c |||ubiquitin-protein ligase E3 |Schizosaccharomyces...    26   7.7  
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    26   7.7  

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 35.5 bits (78), Expect = 0.013
 Identities = 12/18 (66%), Positives = 12/18 (66%)
 Frame = +2

Query: 707 PPPPPXFXXGGXPPPPPP 760
           PPPPP     G PPPPPP
Sbjct: 764 PPPPPGVAGAGPPPPPPP 781



 Score = 33.1 bits (72), Expect = 0.067
 Identities = 12/18 (66%), Positives = 12/18 (66%)
 Frame = +2

Query: 707 PPPPPXFXXGGXPPPPPP 760
           P PPP    GG PPPPPP
Sbjct: 750 PVPPPAPIMGGPPPPPPP 767



 Score = 32.3 bits (70), Expect = 0.12
 Identities = 12/22 (54%), Positives = 12/22 (54%)
 Frame = +2

Query: 707 PPPPPXFXXGGXPPPPPPXXXP 772
           PPPPP     G  PPPPP   P
Sbjct: 762 PPPPPPPGVAGAGPPPPPPPPP 783



 Score = 29.1 bits (62), Expect = 1.1
 Identities = 10/17 (58%), Positives = 10/17 (58%)
 Frame = +2

Query: 710 PPPPXFXXGGXPPPPPP 760
           PPP     G  PPPPPP
Sbjct: 752 PPPAPIMGGPPPPPPPP 768



 Score = 28.7 bits (61), Expect = 1.4
 Identities = 13/29 (44%), Positives = 13/29 (44%), Gaps = 3/29 (10%)
 Frame = +3

Query: 705 PPPPPPXFXXGGPPPPXXPXXL---PPSP 782
           P PPP     G PPPP  P      PP P
Sbjct: 750 PVPPPAPIMGGPPPPPPPPGVAGAGPPPP 778



 Score = 28.3 bits (60), Expect = 1.9
 Identities = 12/26 (46%), Positives = 13/26 (50%)
 Frame = +3

Query: 705 PPPPPPXFXXGGPPPPXXPXXLPPSP 782
           PPPPPP      P P   P   PP+P
Sbjct: 732 PPPPPPAVIVPTPAPAPIPVP-PPAP 756



 Score = 27.9 bits (59), Expect = 2.5
 Identities = 14/39 (35%), Positives = 14/39 (35%)
 Frame = +1

Query: 913  PPPPXXXPXXXXXXXPXXXPXPXXPPXPXPPXXPPXXXP 1029
            PPPP   P       P   P P  PP P     PP   P
Sbjct: 732  PPPP---PPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPP 767



 Score = 25.8 bits (54), Expect(2) = 1.1
 Identities = 11/31 (35%), Positives = 12/31 (38%)
 Frame = +1

Query: 706 PPPPPXXFXXGXPPPPXXXXXSXLPPXXXXP 798
           PPP P       PPPP     +  PP    P
Sbjct: 752 PPPAPIMGGPPPPPPPPGVAGAGPPPPPPPP 782



 Score = 21.4 bits (43), Expect(2) = 1.1
 Identities = 9/28 (32%), Positives = 9/28 (32%)
 Frame = +1

Query: 913 PPPPXXXPXXXXXXXPXXXPXPXXPPXP 996
           PPPP   P           P P   P P
Sbjct: 776 PPPPPPPPAVSAGGSRYYAPAPQAEPEP 803


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 35.1 bits (77), Expect = 0.017
 Identities = 12/18 (66%), Positives = 12/18 (66%)
 Frame = +2

Query: 707 PPPPPXFXXGGXPPPPPP 760
           PPPPP F     PPPPPP
Sbjct: 12  PPPPPGFEPPSQPPPPPP 29



 Score = 26.6 bits (56), Expect = 5.8
 Identities = 12/24 (50%), Positives = 12/24 (50%)
 Frame = +3

Query: 705 PPPPPPXFXXGGPPPPXXPXXLPP 776
           PPPPPP    G  PP   P   PP
Sbjct: 9   PPPPPP--PPGFEPPSQPPPPPPP 30


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 574

 Score = 30.7 bits (66), Expect = 0.36
 Identities = 28/123 (22%), Positives = 31/123 (25%), Gaps = 9/123 (7%)
 Frame = +1

Query: 706  PPPPPXXFXXGXPPPPXXXXXSXLPPXXXXPXXXXXXKXXXXXXXXXXXXXXXXXXK--- 876
            PPPPP     G PP       S LPP    P                             
Sbjct: 313  PPPPPSRRNRGKPPIGNGSSNSSLPPPPPPPRSNAAGSIPLPPQGRSAPPPPPPRSAPST 372

Query: 877  -KKXXPXXXXXXXPPPPXXXPXXXXXXXPXXXP-----XPXXPPXPXPPXXPPXXXPXXX 1038
             ++  P         PP   P       P   P         PP P PP  PP   P   
Sbjct: 373  GRQPPPLSSSRAVSNPPAPPPAIPGRSAPALPPLGNASRTSTPPVPTPPSLPPSAPPSLP 432

Query: 1039 XSS 1047
             S+
Sbjct: 433  PSA 435



 Score = 26.2 bits (55), Expect = 7.7
 Identities = 14/39 (35%), Positives = 14/39 (35%), Gaps = 2/39 (5%)
 Frame = +3

Query: 672 PTXGGGXXXFXPPPPPP--XFXXGGPPPPXXPXXLPPSP 782
           P   G      PPPPPP      G  P P      PP P
Sbjct: 326 PIGNGSSNSSLPPPPPPPRSNAAGSIPLPPQGRSAPPPP 364



 Score = 26.2 bits (55), Expect = 7.7
 Identities = 10/26 (38%), Positives = 11/26 (42%)
 Frame = +3

Query: 705 PPPPPPXFXXGGPPPPXXPXXLPPSP 782
           PP  PP    G P  P  P   P +P
Sbjct: 432 PPSAPPSLPMGAPAAPPLPPSAPIAP 457


>SPAC29B12.07 |sec16||multidomain vesicle coat component
            Sec16|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1995

 Score = 29.1 bits (62), Expect = 1.1
 Identities = 11/25 (44%), Positives = 12/25 (48%)
 Frame = +3

Query: 705  PPPPPPXFXXGGPPPPXXPXXLPPS 779
            PPPPP      GPP       LPP+
Sbjct: 1883 PPPPPMALPKAGPPSAAPTSALPPA 1907


>SPAC26A3.08 |smb1|smb|Sm snRNP core protein
           Smb1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 147

 Score = 28.7 bits (61), Expect = 1.4
 Identities = 10/21 (47%), Positives = 11/21 (52%)
 Frame = +3

Query: 699 FXPPPPPPXFXXGGPPPPXXP 761
           +  PPPP  F  G PPP   P
Sbjct: 126 YTAPPPPAGFGRGAPPPGFRP 146


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 27.9 bits (59), Expect = 2.5
 Identities = 14/39 (35%), Positives = 14/39 (35%)
 Frame = +1

Query: 913  PPPPXXXPXXXXXXXPXXXPXPXXPPXPXPPXXPPXXXP 1029
            PPPP   P       P   P P  PP   PP  P    P
Sbjct: 1708 PPPPMSVPPP-----PSAPPMPAGPPSAPPPPLPASSAP 1741



 Score = 27.1 bits (57), Expect = 4.4
 Identities = 12/28 (42%), Positives = 12/28 (42%), Gaps = 2/28 (7%)
 Frame = +3

Query: 705  PPPPPPXFXX--GGPPPPXXPXXLPPSP 782
            PPPPP         PP P  P   PP P
Sbjct: 1707 PPPPPMSVPPPPSAPPMPAGPPSAPPPP 1734


>SPBC557.04 |ppk29||Ark1/Prk1 family protein kinase
           Ppk29|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 872

 Score = 25.4 bits (53), Expect(2) = 2.6
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = +2

Query: 734 GGXPPPPPPXXXPXF 778
           G  PPPPPP   P +
Sbjct: 353 GSRPPPPPPMPAPIY 367



 Score = 20.6 bits (41), Expect(2) = 2.6
 Identities = 7/15 (46%), Positives = 7/15 (46%)
 Frame = +2

Query: 713 PPPXFXXGGXPPPPP 757
           P P       PPPPP
Sbjct: 347 PTPQVQGSRPPPPPP 361


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 26.6 bits (56), Expect = 5.8
 Identities = 16/63 (25%), Positives = 18/63 (28%)
 Frame = +3

Query: 705  PPPPPPXFXXGGPPPPXXPXXLPPSPXXXXXXXXXPXXXTNXXXXXXXRGGAXXPXKKKK 884
            PP PPP      PP P     LPP P         P   +        R     P     
Sbjct: 1208 PPVPPPST---APPVPTPSAGLPPVPVPTAKAPPVPAPSSEAPSVSTPRSSVPSPHSNAS 1264

Query: 885  XTP 893
             +P
Sbjct: 1265 PSP 1267


>SPAP32A8.03c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 513

 Score = 26.2 bits (55), Expect = 7.7
 Identities = 10/30 (33%), Positives = 11/30 (36%)
 Frame = +2

Query: 671 PNXGGGXXXXFXPPPPPXFXXGGXPPPPPP 760
           P+        F     P F     PPPPPP
Sbjct: 216 PSYAASTQPEFQQTTSPIFSSSSTPPPPPP 245


>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 309

 Score = 26.2 bits (55), Expect = 7.7
 Identities = 28/128 (21%), Positives = 28/128 (21%), Gaps = 6/128 (4%)
 Frame = +3

Query: 672  PTXGGGXXXFXPPPPPPXFXXGGPPPPXXPXXLPPSPXXXXXXXXXPXXXTNXXXXXXXR 851
            P  GGG         P  F    PP P     LP S          P             
Sbjct: 52   PVVGGGVVGERKSNTPKSF--AAPPVPTGAPSLPTSSNNTQQAEERPSMPALGGLFAGGM 109

Query: 852  GGAXXPXKKKKXTPXAXXXXXXXPXXXXXPXXXXXPXPXXPPPXX------PXXXPPXPX 1013
                   K               P     P     P P  PPP        P   PP P 
Sbjct: 110  PKLRHIGKSSASAAPPSAPAPPTPQSELRPPTSAPPRPSIPPPSPASAPPIPSKAPPIPS 169

Query: 1014 XXPXPXXP 1037
              P P  P
Sbjct: 170  SLPPPAQP 177


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,436,067
Number of Sequences: 5004
Number of extensions: 39193
Number of successful extensions: 402
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 55
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 266
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 549226150
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)