Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP13_F_H19
         (1176 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       28   0.18 
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    22   9.1  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 27.9 bits (59), Expect = 0.18
 Identities = 12/27 (44%), Positives = 12/27 (44%), Gaps = 1/27 (3%)
 Frame = +3

Query: 45  PPXPPPPXPXX-PPPXXPPXPPPGXXP 122
           P    PP P   PPP  PP  PP   P
Sbjct: 34  PQRGSPPNPSQGPPPGGPPGAPPSQNP 60



 Score = 26.6 bits (56), Expect = 0.42
 Identities = 12/36 (33%), Positives = 12/36 (33%)
 Frame = +3

Query: 27  PXXXXXPPXPPPPXPXXPPPXXPPXPPPGXXPXXXP 134
           P     P  P    P  P    PP  PPG  P   P
Sbjct: 25  PSPHQSPQAPQRGSPPNPSQGPPPGGPPGAPPSQNP 60



 Score = 24.2 bits (50), Expect = 2.3
 Identities = 11/36 (30%), Positives = 11/36 (30%)
 Frame = +3

Query: 27  PXXXXXPPXPPPPXPXXPPPXXPPXPPPGXXPXXXP 134
           P     P   P       PP     PPPG  P   P
Sbjct: 21  PGPQPSPHQSPQAPQRGSPPNPSQGPPPGGPPGAPP 56



 Score = 23.0 bits (47), Expect = 5.2
 Identities = 10/30 (33%), Positives = 10/30 (33%)
 Frame = +3

Query: 48  PXPPPPXPXXPPPXXPPXPPPGXXPXXXPP 137
           P   P  P    P  P   PP   P   PP
Sbjct: 27  PHQSPQAPQRGSPPNPSQGPPPGGPPGAPP 56


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 22.2 bits (45), Expect = 9.1
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = +3

Query: 54  PPPPXPXXPPP 86
           PP P P  PPP
Sbjct: 338 PPKPAPPPPPP 348



 Score = 22.2 bits (45), Expect = 9.1
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = +3

Query: 78  PPPXXPPXPPP 110
           PP   PP PPP
Sbjct: 338 PPKPAPPPPPP 348


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 198,432
Number of Sequences: 438
Number of extensions: 5768
Number of successful extensions: 21
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 146,343
effective HSP length: 59
effective length of database: 120,501
effective search space used: 40006332
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)