Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP13_F_H18
(885 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL110498-7|CAB57909.2| 302|Caenorhabditis elegans Hypothetical ... 33 0.36
U53181-4|AAO12438.1| 440|Caenorhabditis elegans Heavy chain, un... 29 3.3
U53181-3|AAM29688.1| 516|Caenorhabditis elegans Heavy chain, un... 29 3.3
U53181-2|AAR04675.1| 1837|Caenorhabditis elegans Heavy chain, un... 29 3.3
U53181-1|AAR04676.1| 1839|Caenorhabditis elegans Heavy chain, un... 29 3.3
U52516-1|AAA97926.1| 1839|Caenorhabditis elegans hum-2 protein. 29 3.3
AF101319-3|AAC69355.1| 331|Caenorhabditis elegans Hypothetical ... 29 3.3
AC087079-11|AAK27869.1| 370|Caenorhabditis elegans Hypothetical... 29 3.3
Z99283-1|CAB16536.2| 414|Caenorhabditis elegans Hypothetical pr... 29 5.8
Z81093-1|CAB03148.2| 507|Caenorhabditis elegans Hypothetical pr... 28 7.7
X98601-1|CAA67198.1| 507|Caenorhabditis elegans non-alpha nicot... 28 7.7
X98246-1|CAA66902.1| 507|Caenorhabditis elegans nicotinic acety... 28 7.7
U40799-9|AAA81488.2| 1292|Caenorhabditis elegans Hypothetical pr... 28 7.7
U00058-3|AAD31933.1| 162|Caenorhabditis elegans Ground-like (gr... 28 7.7
>AL110498-7|CAB57909.2| 302|Caenorhabditis elegans Hypothetical
protein Y64G10A.1 protein.
Length = 302
Score = 32.7 bits (71), Expect = 0.36
Identities = 18/52 (34%), Positives = 26/52 (50%)
Frame = +1
Query: 112 CACSPPARASLNYPRTLLTKTSRRNCTTASSPATTTVLSVRAWNMRAKARAP 267
CA + A ++LNY RT L+ +NC P TT + + A N + AP
Sbjct: 38 CATTCGACSNLNYTRTCLSD-GLKNCACVGEPTTTMLCNTIACNYPRGSEAP 88
>U53181-4|AAO12438.1| 440|Caenorhabditis elegans Heavy chain,
unconventional myosinprotein 2, isoform e protein.
Length = 440
Score = 29.5 bits (63), Expect = 3.3
Identities = 15/30 (50%), Positives = 19/30 (63%)
Frame = +1
Query: 28 EFLKILICRLEGDLERLLTK*NFSLYLRCA 117
EF +I++C L+ L RLLTK N YL A
Sbjct: 62 EFARIIVCELKPTLARLLTK-NLPAYLLVA 90
>U53181-3|AAM29688.1| 516|Caenorhabditis elegans Heavy chain,
unconventional myosinprotein 2, isoform c protein.
Length = 516
Score = 29.5 bits (63), Expect = 3.3
Identities = 15/30 (50%), Positives = 19/30 (63%)
Frame = +1
Query: 28 EFLKILICRLEGDLERLLTK*NFSLYLRCA 117
EF +I++C L+ L RLLTK N YL A
Sbjct: 138 EFARIIVCELKPTLARLLTK-NLPAYLLVA 166
>U53181-2|AAR04675.1| 1837|Caenorhabditis elegans Heavy chain,
unconventional myosinprotein 2, isoform a protein.
Length = 1837
Score = 29.5 bits (63), Expect = 3.3
Identities = 15/30 (50%), Positives = 19/30 (63%)
Frame = +1
Query: 28 EFLKILICRLEGDLERLLTK*NFSLYLRCA 117
EF +I++C L+ L RLLTK N YL A
Sbjct: 1459 EFARIIVCELKPTLARLLTK-NLPAYLLVA 1487
>U53181-1|AAR04676.1| 1839|Caenorhabditis elegans Heavy chain,
unconventional myosinprotein 2, isoform b protein.
Length = 1839
Score = 29.5 bits (63), Expect = 3.3
Identities = 15/30 (50%), Positives = 19/30 (63%)
Frame = +1
Query: 28 EFLKILICRLEGDLERLLTK*NFSLYLRCA 117
EF +I++C L+ L RLLTK N YL A
Sbjct: 1461 EFARIIVCELKPTLARLLTK-NLPAYLLVA 1489
>U52516-1|AAA97926.1| 1839|Caenorhabditis elegans hum-2 protein.
Length = 1839
Score = 29.5 bits (63), Expect = 3.3
Identities = 15/30 (50%), Positives = 19/30 (63%)
Frame = +1
Query: 28 EFLKILICRLEGDLERLLTK*NFSLYLRCA 117
EF +I++C L+ L RLLTK N YL A
Sbjct: 1461 EFARIIVCELKPTLARLLTK-NLPAYLLVA 1489
>AF101319-3|AAC69355.1| 331|Caenorhabditis elegans Hypothetical
protein K08D9.5 protein.
Length = 331
Score = 29.5 bits (63), Expect = 3.3
Identities = 20/67 (29%), Positives = 32/67 (47%), Gaps = 1/67 (1%)
Frame = +3
Query: 402 AGNYVKIIYRNYNLALKLGSTTNPSNERIAYGDGVD-KHTELVSWKFITLWENNRVYFKI 578
A +KII Y++ S NE A + +D HT + + +FIT ++N V F +
Sbjct: 57 ANTMIKIIQNEYSI----DSLLETDNETSALIETLDVSHTFIEAAEFITFLDSNDVLFPV 112
Query: 579 HNTKYNQ 599
+ Y Q
Sbjct: 113 NYPTYTQ 119
>AC087079-11|AAK27869.1| 370|Caenorhabditis elegans Hypothetical
protein Y37E3.11 protein.
Length = 370
Score = 29.5 bits (63), Expect = 3.3
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = +3
Query: 798 GXPPRPLDTMVKVXGXPDLYSVGSL 872
G PP+P D +V V G DL+ +G L
Sbjct: 196 GRPPKPTDKVVYVTGSFDLFHIGHL 220
>Z99283-1|CAB16536.2| 414|Caenorhabditis elegans Hypothetical
protein Y70C5C.2 protein.
Length = 414
Score = 28.7 bits (61), Expect = 5.8
Identities = 21/81 (25%), Positives = 37/81 (45%), Gaps = 10/81 (12%)
Frame = +3
Query: 375 FPLNFRLIMAGNYVKIIYRNYNLALKLGS-TTNPSNERIAYGDG-------VDKHTELVS 530
FP+N+ I + NY+ +YN+ LK T+ N+ + DG + K++
Sbjct: 317 FPMNYNNITSCNYLLTTLGSYNVMLKFNKFYTDMKNDFVTLYDGDSTKSPVIAKYSGYYE 376
Query: 531 WKFITLWENNR--VYFKIHNT 587
W F + N V F+ ++T
Sbjct: 377 WPFFNVSTGNSMLVTFRSNST 397
>Z81093-1|CAB03148.2| 507|Caenorhabditis elegans Hypothetical
protein F09E8.7 protein.
Length = 507
Score = 28.3 bits (60), Expect = 7.7
Identities = 16/37 (43%), Positives = 19/37 (51%)
Frame = +2
Query: 170 RPRGETVQQHPHRRLRQCCPSELGI*EPRQGLHHPEC 280
RP + V Q HRRL + PS + R G HHP C
Sbjct: 355 RPHRKNVIQRSHRRLLETGPS-VEENPMRSGEHHPLC 390
>X98601-1|CAA67198.1| 507|Caenorhabditis elegans non-alpha
nicotinic acetylcholinereceptor subunit protein.
Length = 507
Score = 28.3 bits (60), Expect = 7.7
Identities = 16/37 (43%), Positives = 19/37 (51%)
Frame = +2
Query: 170 RPRGETVQQHPHRRLRQCCPSELGI*EPRQGLHHPEC 280
RP + V Q HRRL + PS + R G HHP C
Sbjct: 355 RPHRKNVIQRSHRRLLETGPS-VEENPMRSGEHHPLC 390
>X98246-1|CAA66902.1| 507|Caenorhabditis elegans nicotinic
acetylcholine receptor protein.
Length = 507
Score = 28.3 bits (60), Expect = 7.7
Identities = 16/37 (43%), Positives = 19/37 (51%)
Frame = +2
Query: 170 RPRGETVQQHPHRRLRQCCPSELGI*EPRQGLHHPEC 280
RP + V Q HRRL + PS + R G HHP C
Sbjct: 355 RPHRKNVIQRSHRRLLETGPS-VEENPMRSGEHHPLC 390
>U40799-9|AAA81488.2| 1292|Caenorhabditis elegans Hypothetical protein
F42C5.10 protein.
Length = 1292
Score = 28.3 bits (60), Expect = 7.7
Identities = 23/116 (19%), Positives = 47/116 (40%), Gaps = 2/116 (1%)
Frame = +3
Query: 450 KLGSTTNPSNERIAYG--DGVDKHTELVSWKFITLWENNRVYFKIHNTKYNQYLKMSTTT 623
+L +P + + G D V KH E + K ++ +++ + H+ + ++ T +
Sbjct: 821 RLDDAASPRDHSDSAGNVDYVHKHIERYNAKDASVVQDSHDESRAHSHMLSNTVQTHTHS 880
Query: 624 CXCNSRERVVYGGQQR*QHQGAMVLSSPPSTKTTVLFFIYNRPISTDSLGAPYDRE 791
N + Y QH A S+ ++T +Y+ P P+D+E
Sbjct: 881 QLINQNQATHYDAYATSQHSNAQEYSTVHGSQTHRGSVVYDEPHGQVVYDIPHDQE 936
>U00058-3|AAD31933.1| 162|Caenorhabditis elegans Ground-like (grd
related) protein22 protein.
Length = 162
Score = 28.3 bits (60), Expect = 7.7
Identities = 20/59 (33%), Positives = 31/59 (52%), Gaps = 3/59 (5%)
Frame = -2
Query: 473 GIGCGTELQS--EVVVSVN-DLDIVSGHDESKV*WEVLSNNFLSVADPQLVAVLHGVPS 306
G GCG + +S +V +N D D+ ++E + EVL NN S LV+V +P+
Sbjct: 63 GCGCGRKKRSVDDVEGVINMDSDVECNNEELR---EVLENNMKSTPSDSLVSVRSNLPT 118
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,813,399
Number of Sequences: 27780
Number of extensions: 426212
Number of successful extensions: 1385
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1185
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1383
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2234373834
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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