Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP13_F_H17
         (887 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC8C9.04 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||...    31   0.29 
SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr 1...    29   0.88 
SPAC637.05c |vma2||V-type ATPase V1 subunit B |Schizosaccharomyc...    28   1.5  
SPAC18G6.10 |||chromosome segregation protein |Schizosaccharomyc...    27   2.7  
SPCC1442.05c |||conserved fungal protein|Schizosaccharomyces pom...    27   3.6  
SPAC17A5.04c |mde10|mug139|spore wall assembly peptidase Mde10|S...    27   4.7  
SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    26   6.2  
SPAC1F8.06 |fta5|sma5|Sim4 and Mal2 associated |Schizosaccharomy...    26   6.2  

>SPAC8C9.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 647

 Score = 30.7 bits (66), Expect = 0.29
 Identities = 23/58 (39%), Positives = 27/58 (46%), Gaps = 3/58 (5%)
 Frame = +3

Query: 429 TSTTLTFASRTAAKDASTH-CARRPKSARASLTTSRTPAASA--SLHAPLDVKMATAP 593
           T+T     S+     A  H  AR+P S     TT  TPA SA  S HA    K A+AP
Sbjct: 464 TTTASKRVSKHDKASAEKHKVARKPSSTGQEPTTPSTPAKSAQSSKHARRPSKQASAP 521


>SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 857

 Score = 29.1 bits (62), Expect = 0.88
 Identities = 16/54 (29%), Positives = 24/54 (44%)
 Frame = +3

Query: 405 PAAMAT*GTSTTLTFASRTAAKDASTHCARRPKSARASLTTSRTPAASASLHAP 566
           P    + G S    F S   AK  S   +  PK + ++ TT  +  ++ S HAP
Sbjct: 242 PTPFGSGGPSKPTPFESHGPAKQISVQPSEHPKPSISTTTTGSSYRSAESSHAP 295


>SPAC637.05c |vma2||V-type ATPase V1 subunit B |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 503

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 16/49 (32%), Positives = 25/49 (51%)
 Frame = +1

Query: 646 TVCQLAVTTAPVSVIALHQTDATAHLVIRQHTMDRAVHNVAIARPMLVL 792
           ++ Q+ + T P   I     D T ++   Q  +DR +HN AI  P+ VL
Sbjct: 325 SITQIPILTMPNDDITHPIPDLTGYITEGQIFVDRQLHNNAIYPPINVL 373


>SPAC18G6.10 |||chromosome segregation protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 688

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 10/25 (40%), Positives = 12/25 (48%)
 Frame = +3

Query: 654 PACSNNCAGVGNCTSPNRCDCAPGY 728
           P+    C     C SPN  +C PGY
Sbjct: 365 PSLCRTCPPNAICPSPNYVECKPGY 389


>SPCC1442.05c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 177

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 15/44 (34%), Positives = 20/44 (45%)
 Frame = +2

Query: 416 GYVRNIYNPNICEPHCSKGCVNALCTAPEICTCFPDHVKNAGGF 547
           G   NI+  N   P  ++  + +L TA     CFP   KN G F
Sbjct: 85  GMAGNIFARNRIAP--ARWLITSLSTAATFMFCFPKTSKNIGAF 126


>SPAC17A5.04c |mde10|mug139|spore wall assembly peptidase
           Mde10|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 512

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 13/38 (34%), Positives = 17/38 (44%)
 Frame = +2

Query: 437 NPNICEPHCSKGCVNALCTAPEICTCFPDHVKNAGGFC 550
           NP  C+    K    +LC   +   C+  H KNAG  C
Sbjct: 338 NP-CCDGKTCKLTKGSLCDDQQDACCYQCHFKNAGTLC 374


>SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 536

 Score = 26.2 bits (55), Expect = 6.2
 Identities = 18/73 (24%), Positives = 38/73 (52%), Gaps = 1/73 (1%)
 Frame = +3

Query: 390 SASFVPAAMAT*GTSTTLTFASRTAAKDASTHCARRPKSARASLTTSRTPA-ASASLHAP 566
           + S V  ++++  +S+    +S  AA  + +  +  P S+ + L++S   A +S+S  +P
Sbjct: 6   NTSSVDTSLSSSASSSIPASSSSAAASTSLSSSSVIPSSSSSMLSSSSATAISSSSSSSP 65

Query: 567 LDVKMATAPVESA 605
           L     T+P  S+
Sbjct: 66  LSSSSFTSPASSS 78


>SPAC1F8.06 |fta5|sma5|Sim4 and Mal2 associated |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 385

 Score = 26.2 bits (55), Expect = 6.2
 Identities = 15/62 (24%), Positives = 28/62 (45%)
 Frame = +3

Query: 438 TLTFASRTAAKDASTHCARRPKSARASLTTSRTPAASASLHAPLDVKMATAPVESASAGD 617
           T T    T +  +ST       ++ A+ TTS   + S+S     +   ++ P+ + S+ D
Sbjct: 45  TSTITPETPSSSSSTFVPISTHTSSATNTTSGQLSISSSSSTSSEYSSSSIPITTVSSSD 104

Query: 618 GF 623
            F
Sbjct: 105 SF 106


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,732,165
Number of Sequences: 5004
Number of extensions: 80761
Number of successful extensions: 242
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 233
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 242
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 446488370
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)