Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP13_F_H15
         (974 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    29   1.3  
SPAC18B11.06 |||U3 snoRNP-associated protein Lcp5 |Schizosacchar...    27   4.0  
SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr...    26   7.0  

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 28.7 bits (61), Expect = 1.3
 Identities = 28/91 (30%), Positives = 32/91 (35%)
 Frame = +3

Query: 690 LXLXTPPXPPPLXXASXXFPPXXLPXAPPXAXTWXXXPXXXGXXPXXGVXXXXXXXXXGX 869
           L L +PP PPP         P  +P  PP        P      P  GV         G 
Sbjct: 727 LLLKSPPPPPPAVIVPTP-APAPIPVPPPAPIMGGPPP----PPPPPGV------AGAGP 775

Query: 870 PXPPRXPPLAXXLAVNGSXXXAPRGAXQGSP 962
           P PP  PP    ++  GS   AP  A Q  P
Sbjct: 776 PPPPPPPP---AVSAGGSRYYAP--APQAEP 801


>SPAC18B11.06 |||U3 snoRNP-associated protein Lcp5
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 327

 Score = 27.1 bits (57), Expect = 4.0
 Identities = 15/33 (45%), Positives = 18/33 (54%)
 Frame = -3

Query: 225 RVDSYNRKHSDQCXSDRKFHDFYS*NRKLIITS 127
           RV  ++    D    DRKFHD    NRKL +TS
Sbjct: 259 RVKKHDYGGEDWSLLDRKFHDDDFSNRKLDLTS 291


>SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 305

 Score = 26.2 bits (55), Expect = 7.0
 Identities = 26/73 (35%), Positives = 26/73 (35%)
 Frame = -1

Query: 860 GGRGGSRRXAXXXXXPRXAXXGVPGXGXXGXRXQXXRRETX*SXXXGRGXGWGGXXEXXX 681
           GGRGGSR         R    G  G    G R              GRG G GG      
Sbjct: 9   GGRGGSRGGRGGFNGGRGGFGGGRGGARGGGRG---------GARGGRG-GRGG-----A 53

Query: 680 RGXRGGXDXSRGG 642
           RG RGG    RGG
Sbjct: 54  RGGRGGSSGGRGG 66


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,947,649
Number of Sequences: 5004
Number of extensions: 24952
Number of successful extensions: 81
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 48
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 72
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 501293686
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)