Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP13_F_H14
(841 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC409.10 |ade7||phosphoribosylamidoimidazolesuccinocarboxamide... 48 2e-06
SPBC21B10.03c |||ataxin-2 homolog|Schizosaccharomyces pombe|chr ... 27 3.3
SPBC3B8.04c |||membrane transporter|Schizosaccharomyces pombe|ch... 27 4.4
SPBC530.14c |dsk1||SR protein-specific kinase Dsk1|Schizosacchar... 26 5.8
SPAC26H5.04 |||vacuolar import and degradation protein Vid28|Sch... 26 5.8
SPAC23C4.07 |tht2|mug22|meiotically upregulated gene Mug22|Schiz... 26 5.8
SPAP27G11.15 |slx1||structure-specific endonuclease catalytic su... 26 5.8
SPBC1734.07c |||TRAPP complex subunit Trs85 |Schizosaccharomyces... 26 5.8
>SPBC409.10 |ade7||phosphoribosylamidoimidazolesuccinocarboxamide
synthase Ade7|Schizosaccharomyces pombe|chr 2|||Manual
Length = 299
Score = 47.6 bits (108), Expect = 2e-06
Identities = 55/247 (22%), Positives = 102/247 (41%), Gaps = 25/247 (10%)
Frame = +1
Query: 169 GKTKQVFDVPDQPGYCLLLNKDRITAGDGVKAHDLEGKAAISNQTNAKVFEILKSAGIKT 348
GK + +++ + P L + DRI+A D + + + K + + + F++LK ++T
Sbjct: 18 GKVRDLYECVEFPDDLLFVATDRISAYDFIMENGIPEKGKVLTKISEFWFDVLKPH-VQT 76
Query: 349 AFV--------------KIASETAFLSKKCEMIPIEWVTRRLATGSFLK--RNPGVPEGF 480
+ + + + L KK +++PIE + R TGS K + G G
Sbjct: 77 HLITSRWEELPPVITKHEELKDRSMLVKKYKILPIEAIVRGYITGSAWKEYQKQGTVHGL 136
Query: 481 RFTPPKQETFFKDDANHDPQWSEEQIISAKFNYNGL--LIGRDEVDYMRKATILIFEILE 654
+E + P + + + + ++G + + + ++ +++I
Sbjct: 137 NVPTGMKEAEAFPEPLFTPSTKAAEGHDENIHPDEVSKIVGPELAKQVAETSVKLYKIAR 196
Query: 655 KAWALRDCAPIDMKIEFGVD-TEGSIVLAD-VIDSDSWRLWPSGDKRL-----MVDKQVY 813
+ D K EFGVD T IVL D V+ DS R W + D + DKQ
Sbjct: 197 DVALKKGIIIADTKFEFGVDETTNKIVLVDEVLTPDSSRFWLASDYTVGKSPDSFDKQYL 256
Query: 814 RNLTTGD 834
RN T +
Sbjct: 257 RNWLTAN 263
>SPBC21B10.03c |||ataxin-2 homolog|Schizosaccharomyces pombe|chr
2|||Manual
Length = 791
Score = 27.1 bits (57), Expect = 3.3
Identities = 15/37 (40%), Positives = 20/37 (54%)
Frame = -3
Query: 797 TINLLSPEGHNLQESESMTSANTMLPSVSTPNSIFMS 687
TI PEG N ++ +AN M+PS+ PNS S
Sbjct: 550 TIANSRPEG-NSGSAKKAAAANPMIPSIVLPNSAMPS 585
>SPBC3B8.04c |||membrane transporter|Schizosaccharomyces pombe|chr
2|||Manual
Length = 867
Score = 26.6 bits (56), Expect = 4.4
Identities = 21/78 (26%), Positives = 33/78 (42%), Gaps = 3/78 (3%)
Frame = -3
Query: 737 ANTMLPSVSTPNSIFMSIGAQSRRAQAFSKISNIRIVAFLM*STS---SRPIRRPL*LNL 567
A+ + +V+ P F I R A S + I IV + S + PI P +
Sbjct: 543 ASMWISNVAAPVLCFSIIQPLLRNLPAESDFAKILIVGIALASNVGGIASPISSPQNIVA 602
Query: 566 AEMICSSDHWGSWFASSL 513
+ + + WG WFA S+
Sbjct: 603 LQNMDPAAGWGEWFAVSI 620
>SPBC530.14c |dsk1||SR protein-specific kinase
Dsk1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 544
Score = 26.2 bits (55), Expect = 5.8
Identities = 10/29 (34%), Positives = 15/29 (51%)
Frame = -2
Query: 744 DIRQYNATFCIDSEFYFHVNRCAVTQSPS 658
D++ N CID + H+ A T SP+
Sbjct: 214 DLKPENVLICIDQDALQHIEAPATTSSPT 242
>SPAC26H5.04 |||vacuolar import and degradation protein
Vid28|Schizosaccharomyces pombe|chr 1|||Manual
Length = 729
Score = 26.2 bits (55), Expect = 5.8
Identities = 10/30 (33%), Positives = 19/30 (63%)
Frame = -2
Query: 222 KQAVPRLVRNIEYLFGLTLNEKFAQFILSN 133
+ P+L+ N+ L L++NEK+ F++ N
Sbjct: 49 RNGAPKLLLNLFSLENLSMNEKYQVFVVLN 78
>SPAC23C4.07 |tht2|mug22|meiotically upregulated gene
Mug22|Schizosaccharomyces pombe|chr 1|||Manual
Length = 201
Score = 26.2 bits (55), Expect = 5.8
Identities = 27/122 (22%), Positives = 54/122 (44%)
Frame = +1
Query: 295 NQTNAKVFEILKSAGIKTAFVKIASETAFLSKKCEMIPIEWVTRRLATGSFLKRNPGVPE 474
NQ+ K + S +K F+ +A + + K C M+ + A + LK V +
Sbjct: 82 NQSLMKKTSVSTSNTVKMVFMSLAKQIEQMLKFCMMVYSKLCE---AFETTLK----VAK 134
Query: 475 GFRFTPPKQETFFKDDANHDPQWSEEQIISAKFNYNGLLIGRDEVDYMRKATILIFEILE 654
F+ QE FF+ + + E Q++S F L++ + D + + +++I+E
Sbjct: 135 EFQICDSSQEWFFQFQLGYHRKQMELQMLS--FVAEWLVLTQHYTDALNDSAKTLYDIME 192
Query: 655 KA 660
+
Sbjct: 193 SS 194
>SPAP27G11.15 |slx1||structure-specific endonuclease catalytic
subunit |Schizosaccharomyces pombe|chr 1|||Manual
Length = 271
Score = 26.2 bits (55), Expect = 5.8
Identities = 8/14 (57%), Positives = 11/14 (78%)
Frame = +1
Query: 733 LADVIDSDSWRLWP 774
L ++DSD+WR WP
Sbjct: 106 LKHLVDSDTWRRWP 119
>SPBC1734.07c |||TRAPP complex subunit Trs85 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 618
Score = 26.2 bits (55), Expect = 5.8
Identities = 20/73 (27%), Positives = 28/73 (38%), Gaps = 6/73 (8%)
Frame = -2
Query: 531 VVCVILKERLLFWRSEPEAFWYTRIPF*ERASCKAAGNPFNGDHLTFFG*ERSF------ 370
V+C + + P+ FW PF +R K NG+ LT F
Sbjct: 60 VLCSRDADEFAMRKGYPKGFWELLYPFGDRIRGKVNRRGMNGEMLTLENLNLHFVPIDAL 119
Query: 369 RGNLNEGSFDSCR 331
+L+E SF S R
Sbjct: 120 ESHLSEASFPSLR 132
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,621,133
Number of Sequences: 5004
Number of extensions: 79077
Number of successful extensions: 241
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 237
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 241
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 414453330
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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