Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP13_F_H14
         (841 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    24   2.0  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              22   8.1  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    22   8.1  
AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     22   8.1  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       22   8.1  

>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 23.8 bits (49), Expect = 2.0
 Identities = 10/28 (35%), Positives = 14/28 (50%)
 Frame = +1

Query: 463 GVPEGFRFTPPKQETFFKDDANHDPQWS 546
           G P+GF     + +   +DDA H P  S
Sbjct: 404 GSPDGFESVTSQYKNIREDDARHIPHAS 431


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.8 bits (44), Expect = 8.1
 Identities = 10/34 (29%), Positives = 16/34 (47%)
 Frame = +1

Query: 43   GHSSRDPHRIGSSLHSYLRSKIAKMSHPKQVGQY 144
            GHS      +G   ++   S+    S P+Q G+Y
Sbjct: 1754 GHSGTMGPPVGHPTNASAHSRSGSQSMPRQNGRY 1787


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 21.8 bits (44), Expect = 8.1
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = +1

Query: 154 KLLIEGKTKQVFDVPDQP 207
           ++ +EG  K+ F+VP QP
Sbjct: 191 QVFLEGSQKRKFNVPLQP 208


>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 21.8 bits (44), Expect = 8.1
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = +1

Query: 154 KLLIEGKTKQVFDVPDQP 207
           ++ +EG  K+ F+VP QP
Sbjct: 191 QVFLEGSQKRKFNVPLQP 208


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 21.8 bits (44), Expect = 8.1
 Identities = 8/23 (34%), Positives = 12/23 (52%)
 Frame = -3

Query: 773 GHNLQESESMTSANTMLPSVSTP 705
           GH+  + E M    +M P + TP
Sbjct: 707 GHDSGQDEDMAEDLSMAPDIMTP 729


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 246,627
Number of Sequences: 438
Number of extensions: 5343
Number of successful extensions: 9
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26945694
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)