Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP13_F_H09
         (876 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC965.09 |||nitrilase |Schizosaccharomyces pombe|chr 3|||Manual      43   7e-05
SPBC336.05c |||S-adenosylmethionine-dependentmethyltransferase|S...    31   0.16 
SPAC26A3.11 |||amidohydrolase|Schizosaccharomyces pombe|chr 1|||...    28   2.0  
SPBC21C3.18 |spo4||serine/threonine protein kinase Spo4|Schizosa...    28   2.0  
SPAC17H9.01 |cid16||poly|Schizosaccharomyces pombe|chr 1|||Manual      27   2.7  
SPBC215.01 ||SPBC3B9.20|GTPase activating protein|Schizosaccharo...    27   3.5  
SPBC577.07 |ubp10||ubiquitin C-terminal hydrolase Ubp10|Schizosa...    26   8.1  
SPBC216.02 |mcp5|num1, mug21|cortical anchoring factor for dynei...    26   8.1  
SPAC3C7.13c |||glucose-6-phosphate 1-dehydrogenase |Schizosaccha...    26   8.1  
SPAC3G9.06 |frs2||phenylalanine-tRNA ligase alpha subunit Frs2 |...    26   8.1  

>SPCC965.09 |||nitrilase |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 272

 Score = 42.7 bits (96), Expect = 7e-05
 Identities = 25/80 (31%), Positives = 44/80 (55%)
 Frame = +1

Query: 433 NIICFQELWNMPFAFCTREKQPWCEFAESDEDGPTTXFLRELAIKYAMVIVSSILERDEK 612
           N+I F EL    +  C      + + AE   +GP+   +  LA KY + I+    E++EK
Sbjct: 39  NLILFPELITSGYE-CGNT---FTQIAEIAGEGPSFKTMSNLAAKYHVNIIYGFPEKEEK 94

Query: 613 PSDILWNTAVVISDXGNVIG 672
            S+I++N+ + I++ GN+ G
Sbjct: 95  QSNIIYNSCIYITENGNLGG 114


>SPBC336.05c |||S-adenosylmethionine-
           dependentmethyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 378

 Score = 31.5 bits (68), Expect = 0.16
 Identities = 20/57 (35%), Positives = 28/57 (49%)
 Frame = -2

Query: 524 SSDSANSHHGCFSLVQNAKGMFHNSWKQMMLTPSWPATSMIFLTLLKIAFFCSLTGR 354
           S ++A SH  CF   QN+  + +       +   +P T   F+ LLK AFF  L GR
Sbjct: 239 SKNNAASH--CFLKDQNSSILLYKKITYPFMEQLFPPTVQQFMNLLKKAFFDHLFGR 293


>SPAC26A3.11 |||amidohydrolase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 322

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 31/122 (25%), Positives = 54/122 (44%)
 Frame = +1

Query: 304 RIVKVGIVQHSIAVPTDRPVNEQKKAIFNKVKKIIDVAGQEGVNIICFQELWNMPFAFCT 483
           R  ++G+VQ  +A   D+  N Q   +     K+++ A + G N+I   E++N P+   T
Sbjct: 42  RAFRIGLVQ--LANTKDKSENLQLARL-----KVLEAA-KNGSNVIVLPEIFNSPYG--T 91

Query: 484 REKQPWCEFAESDEDGPTTXFLRELAIKYAMVIVSSILERDEKPSDILWNTAVVISDXGN 663
                + E  E  E  P+   L  +A      +    +   E+    L+NTA+V    G 
Sbjct: 92  GYFNQYAEPIE--ESSPSYQALSSMAKDTKTYLFGGSI--PERKDGKLYNTAMVFDPSGK 147

Query: 664 VI 669
           +I
Sbjct: 148 LI 149


>SPBC21C3.18 |spo4||serine/threonine protein kinase
           Spo4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 429

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 17/53 (32%), Positives = 24/53 (45%), Gaps = 3/53 (5%)
 Frame = +1

Query: 544 FLRELAIKYAMVIVSSILERDEKPSDILWNTAV---VISDXGNVIGETSXEPT 693
           +LR+L    A +    I+ RD KP +  WN      VI D G    + +  PT
Sbjct: 162 YLRDLLKGLAHIDAKGIIHRDIKPGNFAWNPYTQRGVILDFGLAQWQEADAPT 214


>SPAC17H9.01 |cid16||poly|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1202

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 29/116 (25%), Positives = 48/116 (41%)
 Frame = -1

Query: 498 RLLLPCAEREGHVPQLLETDDVNTLLAGNIDDFLDFIENCFLLLVDWTIGGHRDGMLNYS 319
           R LL C +R    P +L   DV      ++DD + F+          T  GH++ + N S
Sbjct: 119 RALLSCCKRSKD-PSILFPTDVPC----SLDDDVSFL----------TFKGHKNHLENRS 163

Query: 318 YLHNSRGSGLLVLGRESVCGDVEVSLLSCSDRGFFQFDFKVIPPPKMNSVELFQVA 151
           + H+S      V+         E + L   DR       K++  P  N ++L +V+
Sbjct: 164 FFHDSESDNFKVVLSNCAINSKEDNNLVTEDR--VNLGAKLLLVPVQNLIKLLKVS 217


>SPBC215.01 ||SPBC3B9.20|GTPase activating
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 834

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 17/52 (32%), Positives = 28/52 (53%)
 Frame = -1

Query: 396 DFIENCFLLLVDWTIGGHRDGMLNYSYLHNSRGSGLLVLGRESVCGDVEVSL 241
           +FI+ CF    + +  GH D +++ S   +S GS    +G  S   D++VSL
Sbjct: 661 EFIQRCFHFADEASPDGHSDTLIDISDHMSSTGSENRSVGANS---DIKVSL 709


>SPBC577.07 |ubp10||ubiquitin C-terminal hydrolase
           Ubp10|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 502

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +1

Query: 136 NNLTGRDLEEFNRIHFGRRNNLEI 207
           NN+  R +EE N I  G+R  LE+
Sbjct: 8   NNILKRHIEEDNNIDNGKRKKLEL 31


>SPBC216.02 |mcp5|num1, mug21|cortical anchoring factor for dynein
           Mcp5/Num1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 968

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 9/28 (32%), Positives = 15/28 (53%)
 Frame = -3

Query: 679 MFPRSRFRXH*LQPQCSKVCPKASRPFL 596
           MF +S +R   + P C  +C   + PF+
Sbjct: 865 MFKKSHWRYFWINPHCEMLCWSKTNPFI 892


>SPAC3C7.13c |||glucose-6-phosphate 1-dehydrogenase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 473

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 17/54 (31%), Positives = 25/54 (46%), Gaps = 1/54 (1%)
 Frame = +1

Query: 457 WNMPFAFCTREKQPWCEFAESDE-DGPTTXFLRELAIKYAMVIVSSILERDEKP 615
           +N  F    +EK+   E    D   G  T F+R   ++YA  I   IL+  +KP
Sbjct: 396 YNEQFKDLMKEKRDGYEILFEDAIRGDPTKFIRYDEVEYAWKIWDEILDSPKKP 449


>SPAC3G9.06 |frs2||phenylalanine-tRNA ligase alpha subunit Frs2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 499

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 13/38 (34%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
 Frame = +1

Query: 106 ETHSLESII-NNNLTGRDLEEFNRIHFGRRNNLEIKLK 216
           E H +E +I + N+T  DL  F  + FG+ N   ++ K
Sbjct: 369 EFHQVEGVICDRNITLGDLIGFLEVFFGKMNVKNLRFK 406


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,266,537
Number of Sequences: 5004
Number of extensions: 64381
Number of successful extensions: 178
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 172
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 178
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 438479610
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)