Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP13_F_H09
(876 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_0405 - 17767303-17767665,17767815-17768039,17768115-177683... 166 2e-41
02_04_0096 + 19669428-19669525,19670770-19670818,19671041-196711... 35 0.098
06_01_0729 + 5367796-5368071,5368390-5368483,5368708-5368782,536... 33 0.30
04_04_0835 + 28538032-28539006,28539113-28539203,28539291-285394... 30 2.8
05_03_0259 - 11161447-11161706,11161764-11164266 29 6.5
03_02_0801 + 11343227-11343885,11344018-11344087,11344362-113444... 28 8.5
>07_03_0405 -
17767303-17767665,17767815-17768039,17768115-17768342,
17768607-17768621,17768622-17768810,17769106-17769213,
17769917-17770045
Length = 418
Score = 166 bits (403), Expect = 2e-41
Identities = 93/194 (47%), Positives = 120/194 (61%), Gaps = 8/194 (4%)
Frame = +1
Query: 115 SLESIINNNLTGRDLEEFNRIHFGRR--NNLE-IKLKESSIXXXXXXXXXXXXXXFPAKD 285
SL ++ +NL+ +E +R+ G LE I L E++ F A
Sbjct: 28 SLHRLLQSNLSPELFKEASRLLLGLNCGRALEAISLPEATSALAKAHNFDVQAFRFDADK 87
Query: 286 EQTRPPRIVKVGIVQHSIAVPTDRPVNEQKKAIFNKVKKIIDVAGQEGVNIICFQ----- 450
E R PR+++VG++Q+SIA+PT +QKKAI KVK +ID AG GVNI+C Q
Sbjct: 88 EYLRQPRVIRVGLIQNSIAIPTTSHFADQKKAIMEKVKPMIDAAGDAGVNILCLQVSQLS 147
Query: 451 ELWNMPFAFCTREKQPWCEFAESDEDGPTTXFLRELAIKYAMVIVSSILERDEKPSDILW 630
E W MPFAFCTREK+ WCEFAE DG +T FL++LA KY MVIVS ILERD +I+W
Sbjct: 148 EAWTMPFAFCTREKR-WCEFAE-PVDGESTQFLQQLAKKYNMVIVSPILERDVNHGEIVW 205
Query: 631 NTAVVISDXGNVIG 672
NTAVVI + GN+IG
Sbjct: 206 NTAVVIGNHGNIIG 219
Score = 86.6 bits (205), Expect = 2e-17
Identities = 36/56 (64%), Positives = 39/56 (69%)
Frame = +3
Query: 684 RTHIPRVGXFNESNYXMEGTPGHPVFATRYGXIXVNXCFRRXHXLNWMMFGXNGPE 851
+ HIPRVG FNES Y MEG GHPVF T YG I VN C+ R H LNW+ FG NG E
Sbjct: 223 KNHIPRVGDFNESTYYMEGNTGHPVFETAYGKIGVNICYGRHHPLNWLAFGLNGAE 278
>02_04_0096 +
19669428-19669525,19670770-19670818,19671041-19671132,
19671235-19671386,19671478-19671524,19671617-19671650,
19671769-19671935,19672070-19672166,19672239-19672408
Length = 301
Score = 34.7 bits (76), Expect = 0.098
Identities = 23/92 (25%), Positives = 48/92 (52%)
Frame = +1
Query: 397 KKIIDVAGQEGVNIICFQELWNMPFAFCTREKQPWCEFAESDEDGPTTXFLRELAIKYAM 576
+++I A ++G NI+ QEL+ + FC ++ + + A+ + PT ++LA + +
Sbjct: 32 ERLIREAHKKGANIVLVQELFEGQY-FCQAQRLDFFQRAKPYKGNPTIIRFQKLAKELEV 90
Query: 577 VIVSSILERDEKPSDILWNTAVVISDXGNVIG 672
VI S E+ ++ +N+ +I G +G
Sbjct: 91 VIPVSFF---EEANNAHYNSVAIIDADGTDLG 119
Score = 31.9 bits (69), Expect = 0.69
Identities = 15/45 (33%), Positives = 20/45 (44%)
Frame = +3
Query: 666 DRGNIARTHIPRVGXFNESNYXMEGTPGHPVFATRYGXIXVNXCF 800
D G ++HIP + E Y G G F T+Y I V C+
Sbjct: 117 DLGLYRKSHIPDGPGYQEKFYFNPGDTGFKAFKTKYATIGVGICW 161
>06_01_0729 +
5367796-5368071,5368390-5368483,5368708-5368782,
5368919-5368997,5369155-5369170,5369260-5369346,
5369451-5369533,5369616-5369769
Length = 287
Score = 33.1 bits (72), Expect = 0.30
Identities = 24/78 (30%), Positives = 37/78 (47%), Gaps = 2/78 (2%)
Frame = +1
Query: 439 ICFQELWNMPFAFCTREKQPWCEFAESDEDG--PTTXFLRELAIKYAMVIVSSILERDEK 612
+ FQE+WN P++ E P E + G P+ L E+A + + IV + E+
Sbjct: 16 VLFQEIWNCPYSM---ETLP--SHGEDIDGGASPSVSMLSEVAARRRITIVGGSI--PER 68
Query: 613 PSDILWNTAVVISDXGNV 666
S L+NT VI G +
Sbjct: 69 SSGRLFNTCCVIGPDGQI 86
>04_04_0835 +
28538032-28539006,28539113-28539203,28539291-28539448,
28539543-28539594,28539707-28539786,28539890-28539983,
28540078-28540633,28541160-28541259,28541576-28541617,
28542445-28542588
Length = 763
Score = 29.9 bits (64), Expect = 2.8
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = -2
Query: 530 PSSSDSANSHHGCFSLVQNAKGMFHNSWKQMMLTPSW 420
PS++ S N F L++N NSW Q+++T W
Sbjct: 628 PSTTASVNLDESQFKLLRNCFQGTSNSWGQVIVTAGW 664
>05_03_0259 - 11161447-11161706,11161764-11164266
Length = 920
Score = 28.7 bits (61), Expect = 6.5
Identities = 18/70 (25%), Positives = 33/70 (47%)
Frame = -2
Query: 644 TTAVFQSMSEGFSSLSNIEDTITIAYLMASSRRKXVVGPSSSDSANSHHGCFSLVQNAKG 465
TT + ++ +GF SL I+D + + +LM K V P+ + G F + +
Sbjct: 428 TTLTYNTLLKGFCSLHAIDDALRLWFLML----KRGVAPNEISCSTLLDGLFKAGKTEQA 483
Query: 464 MFHNSWKQMM 435
+ N WK+ +
Sbjct: 484 L--NLWKETL 491
>03_02_0801 +
11343227-11343885,11344018-11344087,11344362-11344433,
11344511-11344980,11345626-11346598
Length = 747
Score = 28.3 bits (60), Expect = 8.5
Identities = 13/46 (28%), Positives = 23/46 (50%), Gaps = 2/46 (4%)
Frame = -2
Query: 503 HHGCFSLVQNAKGMFHNSWKQMMLTPSWP--ATSMIFLTLLKIAFF 372
H C ++++ + G+ N W+ + PS+P SMI L + F
Sbjct: 649 HSSCRNVIERSFGVLKNKWRILFHLPSYPQQKQSMIICACLALHNF 694
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,007,172
Number of Sequences: 37544
Number of extensions: 452389
Number of successful extensions: 1156
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1107
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1154
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2467979640
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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