Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP13_F_H08
         (909 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    32   0.098
SPBC16G5.05c |||MSP domain|Schizosaccharomyces pombe|chr 2|||Manual    29   0.91 
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    29   0.91 
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    28   1.6  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    28   2.1  
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    27   3.7  

>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 32.3 bits (70), Expect = 0.098
 Identities = 15/33 (45%), Positives = 15/33 (45%)
 Frame = +2

Query: 782  SXXPPXXXPPTPPXHPPPXXAXPXPLFPPXXGG 880
            S  PP    PTPP  PPP    P P  PP   G
Sbjct: 1696 SAAPPQMSAPTPP--PPPMSVPPPPSAPPMPAG 1726



 Score = 26.6 bits (56), Expect = 4.9
 Identities = 13/31 (41%), Positives = 14/31 (45%)
 Frame = +2

Query: 773  PXPSXXPPXXXPPTPPXHPPPXXAXPXPLFP 865
            P PS  P    PP+ P  PPP  A   P  P
Sbjct: 1716 PPPSAPPMPAGPPSAP--PPPLPASSAPSVP 1744



 Score = 25.8 bits (54), Expect = 8.5
 Identities = 13/31 (41%), Positives = 14/31 (45%), Gaps = 4/31 (12%)
 Frame = +2

Query: 779  PSXXPPXXXPPTPPXHPP----PXXAXPXPL 859
            P+  PP    P PP  PP    P  A P PL
Sbjct: 1705 PTPPPPPMSVPPPPSAPPMPAGPPSAPPPPL 1735


>SPBC16G5.05c |||MSP domain|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 383

 Score = 29.1 bits (62), Expect = 0.91
 Identities = 11/21 (52%), Positives = 11/21 (52%)
 Frame = +2

Query: 773 PXPSXXPPXXXPPTPPXHPPP 835
           P PS  P      TPP HPPP
Sbjct: 256 PKPSESPRRSVSSTPPVHPPP 276


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 29.1 bits (62), Expect = 0.91
 Identities = 14/34 (41%), Positives = 14/34 (41%), Gaps = 2/34 (5%)
 Frame = +2

Query: 773 PXPSXXPPXXXPPTPPXHPP--PXXAXPXPLFPP 868
           P P   PP   P  PP  PP  P  A   P  PP
Sbjct: 418 PTPPSLPPSAPPSLPPSAPPSLPMGAPAAPPLPP 451


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 10/21 (47%), Positives = 11/21 (52%)
 Frame = +2

Query: 773 PXPSXXPPXXXPPTPPXHPPP 835
           P P   PP   PP+ P  PPP
Sbjct: 9   PPPPPPPPGFEPPSQPPPPPP 29


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 14/32 (43%), Positives = 14/32 (43%)
 Frame = +2

Query: 773 PXPSXXPPXXXPPTPPXHPPPXXAXPXPLFPP 868
           P P   P    PP PP  PPP  A   P  PP
Sbjct: 750 PVPPPAPIMGGPPPPP--PPPGVAGAGPPPPP 779


>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 309

 Score = 27.1 bits (57), Expect = 3.7
 Identities = 13/34 (38%), Positives = 14/34 (41%), Gaps = 2/34 (5%)
 Frame = +2

Query: 773 PXPSXXPPXXXPPTPPXHPPPXXAXP--XPLFPP 868
           P PS  PP   P  P   PP   + P   P  PP
Sbjct: 166 PIPSSLPPPAQPAAPVKSPPSAPSLPSAVPPMPP 199



 Score = 26.2 bits (55), Expect = 6.4
 Identities = 13/33 (39%), Positives = 13/33 (39%), Gaps = 1/33 (3%)
 Frame = +2

Query: 773 PXPSXXPPXXXPPTPPXHPP-PXXAXPXPLFPP 868
           P     PP   PP P   PP P  A P P   P
Sbjct: 133 PQSELRPPTSAPPRPSIPPPSPASAPPIPSKAP 165



 Score = 26.2 bits (55), Expect = 6.4
 Identities = 16/47 (34%), Positives = 17/47 (36%), Gaps = 2/47 (4%)
 Frame = +2

Query: 773 PXPSXXPPXXX--PPTPPXHPPPXXAXPXPLFPPXXGGXGXGXXSLP 907
           P PS  PP     PP P   PP   + P P  P           SLP
Sbjct: 145 PRPSIPPPSPASAPPIPSKAPPIPSSLPPPAQPAAPVKSPPSAPSLP 191


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,671,231
Number of Sequences: 5004
Number of extensions: 44732
Number of successful extensions: 213
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 118
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 190
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 460503700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)